HHsearch alignment for GI: 254780941 and conserved domain: PRK09435
>PRK09435 arginine/ornithine transport system ATPase; Provisional.
Probab=99.33 E-value=2.1e-11 Score=93.67 Aligned_cols=188 Identities=15% Similarity=0.205 Sum_probs=98.2
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHC------CCEEE-----ECCCCC------------------------CEEEE
Q ss_conf 43685121899833899868899999868------92021-----058888------------------------60212
Q gi|254780941|r 16 VQDNSRSGCVALVGATNAGKSTLVNRFVG------AKVSI-----VTHKVQ------------------------TTRSI 60 (311)
Q Consensus 16 ~~~~~ksg~VaivG~pN~GKSTL~N~l~g------~~vsi-----vS~k~~------------------------TTr~~ 60 (311)
T Consensus 43 ~~~~g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~~srg~ 122 (325)
T PRK09435 43 LPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGT 122 (325)
T ss_pred HHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 30179825997427999868899999999999679858999978999988861010388887614799848840677888
Q ss_pred EEEEE----------EECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 78999----------73994899998798401012357532100234555532100110000100000001223454428
Q gi|254780941|r 61 VRGIV----------SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 (311)
Q Consensus 61 i~gi~----------~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~ 130 (311)
T Consensus 123 lgg~~~~~~~~~~~~~a~g~d~i~iETvGvGQ~-----------e~~v~~~~d~~~~~~~p~~--GD~~Q~~-K-~GImE 187 (325)
T PRK09435 123 LGGVARKTRETMLLCEAAGFDVILVETVGVGQS-----------ETAVAGMVDFFLLLQLPGA--GDELQGI-K-KGIME 187 (325)
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHH-----------HHHHHHHCCEEEEEECCCC--CCHHHHH-H-HHHHH
T ss_conf 677335499999999977999899970677714-----------8899874266888835887--6088998-8-65775
Q ss_pred CCCEEEEEECCCHH---HHHHHHHHHHHHHC-----CCC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC-
Q ss_conf 72025787211010---43457888864100-----123-343110001387426789999983662235689643343-
Q gi|254780941|r 131 SRLILILNKIDCVK---PERLLEQAEIANKL-----VFI-EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD- 200 (311)
Q Consensus 131 ~p~IiVlNKiDlv~---~~~l~~~~~~~~~~-----~~~-~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td- 200 (311)
T Consensus 188 iaDi~vVNKaDgd~~~~A~~t~~e~~~aL~l~~~~~~~W~ppVl~~SA~~g~GI~eL~~~I~~h~~---~l~~sG~l~~r 264 (325)
T PRK09435 188 LADLIVINKADGDNHTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDELWQAIEDHRA---ALTASGEFAAR 264 (325)
T ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH---HHHHCCHHHHH
T ss_conf 042689977675565899999999999986078878999999899981589987999999999999---99978869999
Q ss_pred --CHHHHHHHHHHHHHHHHHHHC
Q ss_conf --025678998759999997300
Q gi|254780941|r 201 --LPMFHFTAEITREKLFLHLHK 221 (311)
Q Consensus 201 --~~~~~~i~EiIREki~~~l~~ 221 (311)
T Consensus 265 R~~Q~~~wm~~~I~e~L~~~~~~ 287 (325)
T PRK09435 265 RREQQVEWMWEMVEEGLLARLFA 287 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999985