HHsearch alignment for GI: 254780941 and conserved domain: PRK10463
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional.
Probab=98.78 E-value=6e-09 Score=77.77 Aligned_cols=157 Identities=19% Similarity=0.197 Sum_probs=82.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC-----CEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHH
Q ss_conf 18998338998688999998689-----2021058888602127899973994899998798401012357532100234
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGA-----KVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWS 97 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~-----~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~ 97 (311)
T Consensus 105 ~~lNl~sSPGSGKTtLLe~ti~~L~~~~~~aVIeGD~~T~~DA~R--I~~~Gv~avQInTG~~----CHLDA~MV~~al~ 178 (290)
T PRK10463 105 LVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAAR--IRATGTPAIQVNTGKG----CHLDAQMIADAAP 178 (290)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH--HHHCCCCEEEECCCCC----CCCCHHHHHHHHH
T ss_conf 899930699878899999999987336757999604235667999--9976995899547997----6759999999998
Q ss_pred HHHHHHHHCCCC--------HHHHHHHCCHHHH-HHHHHHCCC----------CCEEEEEECCCHHHH--HHHHHHHHHH
Q ss_conf 555532100110--------0001000000012-234544287----------202578721101043--4578888641
Q gi|254780941|r 98 TIKHADIVCLVV--------DSHRELKVNIHDL-LKEIAKRSS----------RLILILNKIDCVKPE--RLLEQAEIAN 156 (311)
Q Consensus 98 ~l~~aDiil~Vv--------Da~~~~~~~~~~i-l~~l~~~~~----------p~IiVlNKiDlv~~~--~l~~~~~~~~ 156 (311)
T Consensus 179 ~l~l~~~dllfIENVGNLVCPA~FDLGE~~kVvvlSVtEGeDKPlKYP~mF~~ad~vlinKiDLlp~~dFD~~~~~~~~~ 258 (290)
T PRK10463 179 RLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAR 258 (290)
T ss_pred HCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHCCEEEEEHHHHHHHCCCCHHHHHHHHH
T ss_conf 48987798999812788435512036776179999706888864447667642578998656512202889999999999
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 00123343110001387426789999983
Q gi|254780941|r 157 KLVFIEKTFMVSATKGHGCDDVLNYLCST 185 (311)
Q Consensus 157 ~~~~~~~i~~ISAk~g~Gid~L~~~L~~~ 185 (311)
T Consensus 259 ~vNp~~~v~~vSa~tGeGld~W~~WL~~~ 287 (290)
T PRK10463 259 EVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 86989858997568887899999999997