HHsearch alignment for GI: 254780941 and conserved domain: PRK12312
>PRK12312 infB translation initiation factor IF-2; Provisional.
Probab=99.87 E-value=1.7e-21 Score=158.91 Aligned_cols=158 Identities=23% Similarity=0.309 Sum_probs=117.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCC-CCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHH
Q ss_conf 851218998338998688999998689202105888-8602127899973994899998798401012357532100234
Q gi|254780941|r 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKV-QTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWS 97 (311)
Q Consensus 19 ~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~-~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~ 97 (311)
T Consensus 114 ~~R~PvVtimGHVDHGKTsLLD~iR~t~V~~--~EaGGITQhIGA~~v~~~~~~itFiDTPGH-e-------AFt~mR~R 183 (610)
T PRK12312 114 EKRPPIVTIMGHVDHGKTTLLDTIRKTNVVA--SEAGGITQHIGAYQVEYQGKKITFIDTPGH-E-------AFTEMRAR 183 (610)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCCCCCCCEECEEEEEECCCEEEEECCCCH-H-------HHHHHHHC
T ss_conf 7889989996772577225889985486413--467766440044999867976899728967-9-------89999970
Q ss_pred HHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHHHH----HHHCCCCCCCCCCCCCC
Q ss_conf 55553210011000010000000122345442872025787211010--4345788886----41001233431100013
Q gi|254780941|r 98 TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK--PERLLEQAEI----ANKLVFIEKTFMVSATK 171 (311)
Q Consensus 98 ~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~--~~~l~~~~~~----~~~~~~~~~i~~ISAk~ 171 (311)
T Consensus 184 Ga~vtDI~iLVVaaddGv~pQTiEaI~~ak~a~vpiiVAiNKiDkp~a~~~~v~~~L~~~g~~~E~~GGdv~~V~iSAkt 263 (610)
T PRK12312 184 GAKVTDIVILVVAADDGVKPQTEEAIDHAKAANVPIIVFVNKMDKPNANPDRIKNELSKYDLVPEEWGGDTPFVYGSALK 263 (610)
T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCEEEEEECCC
T ss_conf 77654579999975789774269999999975998899850446788987899999987076678857944599903687
Q ss_pred CCCHHHHHHHHHHHC
Q ss_conf 874267899999836
Q gi|254780941|r 172 GHGCDDVLNYLCSTL 186 (311)
Q Consensus 172 g~Gid~L~~~L~~~l 186 (311)
T Consensus 264 g~GId~LLe~IlL~A 278 (610)
T PRK12312 264 NEGIDELLDSILLLA 278 (610)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 989999999999999