HHsearch alignment for GI: 254780941 and conserved domain: PRK12723
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=98.00 E-value=3.2e-05 Score=53.61 Aligned_cols=123 Identities=25% Similarity=0.352 Sum_probs=66.9
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHC-------CC---EEEEC-C--CCCC-----EE-----EEEEEEE---------
Q ss_conf 685121899833899868899999868-------92---02105-8--8886-----02-----1278999---------
Q gi|254780941|r 18 DNSRSGCVALVGATNAGKSTLVNRFVG-------AK---VSIVT-H--KVQT-----TR-----SIVRGIV--------- 65 (311)
Q Consensus 18 ~~~ksg~VaivG~pN~GKSTL~N~l~g-------~~---vsivS-~--k~~T-----Tr-----~~i~gi~--------- 65 (311)
T Consensus 170 ~~~k~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l 249 (388)
T PRK12723 170 DNLKKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI 249 (388)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHH
T ss_conf 35576289998998875787999999999986267677379998078758899999999999788069857889999999
Q ss_pred -EECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH--HHH-HCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf -739948999987984010123575321002345555--321-0011000010000000122345442872025787211
Q gi|254780941|r 66 -SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH--ADI-VCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 (311)
Q Consensus 66 -~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~--aDi-il~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiD 141 (311)
T Consensus 250 ~~~~~~D~IlIDTAGrs~-~d---~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~-d~~~i~~~f~~~~-~~~~I~TKlD 323 (388)
T PRK12723 250 TQSKDFDLVLIDTIGKSP-KD---FMKLAEMKELLNACGRDAEFHLAVSSTTKTS-DIKEIFHQFSPFS-YKTVIFTKLD 323 (388)
T ss_pred HHHCCCCEEEEECCCCCC-CC---HHHHHHHHHHHHHCCCCCEEEEEECCCCCHH-HHHHHHHHHCCCC-CCEEEEEECC
T ss_conf 972499999995899885-68---9999999999974189845999987989999-9999999842799-9849998322
Q ss_pred CHHHH
Q ss_conf 01043
Q gi|254780941|r 142 CVKPE 146 (311)
Q Consensus 142 lv~~~ 146 (311)
T Consensus 324 Et~~~ 328 (388)
T PRK12723 324 ETTCV 328 (388)
T ss_pred CCCCC
T ss_conf 78986