HHsearch alignment for GI: 254780941 and conserved domain: TIGR00487

>TIGR00487 IF-2 translation initiation factor IF-2; InterPro: IPR000178 Initiation factor 2 (IF-2) (gene infB) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial IF-2 (IF-2(mt)) as well as to algal and plants chloroplast IF-2 (IF-2(chl)). Both IF-2(mt) and IF-2(chl) are encoded by nuclear genes and are produced as precursor proteins with a transit peptide. An exception are red algae where IF-2(chl) is encoded by the plastid genome .; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.26  E-value=4e-11  Score=91.82  Aligned_cols=162  Identities=25%  Similarity=0.268  Sum_probs=118.2

Q ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEE-EEEEECCE-EEEEEECCCCHHHCCCCCCCCCC
Q ss_conf             43685121899833899868899999868920210588886021278-99973994-89999879840101235753210
Q gi|254780941|r   16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-GIVSEKES-QIVFLDTPGIFNAKDSYHKLMIR   93 (311)
Q Consensus        16 ~~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~-gi~~~~~~-qiifvDTPG~~~~~~~l~~~~~~   93 (311)
T Consensus        84 ~~~~~~pp~~~~~gh~dhg~~~ll~~~~~~~~~~~~-~gg~~~~~g~y~~~~~~~~~~~~f~d~pgh~--------~f~~  154 (594)
T TIGR00487        84 DLLVPRPPVVTIMGHVDHGKTSLLDSIRKTKVAAGE-AGGITQHIGAYHVEKEDGKKWITFLDTPGHE--------AFTL  154 (594)
T ss_pred             HHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCC-CCCCHHHCCEEEEEECCCCEEEEEECCCCHH--------HHHH
T ss_conf             111024763688512355403456555410000111-3652010130456642884379984077536--------7787


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHHHHH----HHCCCCCCCCCC
Q ss_conf             023455553210011000010000000122345442872025787211010--43457888864----100123343110
Q gi|254780941|r   94 LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK--PERLLEQAEIA----NKLVFIEKTFMV  167 (311)
Q Consensus        94 ~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~--~~~l~~~~~~~----~~~~~~~~i~~I  167 (311)
T Consensus       155 ~~~~g~~~~d~~~~~~~~~dg~~~~~~~~~~h~~~~~~p~~~~~n~~d~p~~~pd~~~~~~~~~g~~~~~wgg~~~~~~~  234 (594)
T TIGR00487       155 MRARGAKVTDIVVLVVAADDGVKPQTIEAISHAKAANVPLIVAVNKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPV  234 (594)
T ss_pred             HHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCHHCCCCEEEEEE
T ss_conf             76337610015799984155642356887653333077369986124676678778999987517750112783468862


Q ss_pred             CCCCCCCHHHHHHHHHHHC
Q ss_conf             0013874267899999836
Q gi|254780941|r  168 SATKGHGCDDVLNYLCSTL  186 (311)
Q Consensus       168 SAk~g~Gid~L~~~L~~~l  186 (311)
T Consensus       235 ~~~~g~g~~~l~~~~l~~~  253 (594)
T TIGR00487       235 SALTGDGIDELLDAILLQS  253 (594)
T ss_pred             ECCCCCCHHHHHHHHHHHH
T ss_conf             0013676578888888764