HHsearch alignment for GI: 254780941 and conserved domain: TIGR01394
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=99.69 E-value=7e-17 Score=129.07 Aligned_cols=155 Identities=20% Similarity=0.241 Sum_probs=113.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCC-CCCEEEEE--------------E---EEEEECC----EEEEEEECCCCH
Q ss_conf 899833899868899999868920210588-88602127--------------8---9997399----489999879840
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHK-VQTTRSIV--------------R---GIVSEKE----SQIVFLDTPGIF 81 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k-~~TTr~~i--------------~---gi~~~~~----~qiifvDTPG~~ 81 (311)
T Consensus 3 NIAIIAHVDHGKTTLVD~LL~Qsgf-~f~~~~~~~~ER~MDSNDLErERGITILaKNTav~y~g~dG~~~INIvDTPG-- 79 (609)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGF-TFRADNEAVAERVMDSNDLERERGITILAKNTAVRYNGKDGVTKINIVDTPG-- 79 (609)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHH-HHHHCCCCCEEEEECCCCCCHHCCCCCCCEEEEEEECCCCCEEEEEEEECCC--
T ss_conf 1899988069943689888887658-8641588321354067652100155201300366252889718997781689--
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHHHHH----
Q ss_conf 101235753210023455553210011000010000000122345442872025787211010--43457888864----
Q gi|254780941|r 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK--PERLLEQAEIA---- 155 (311)
Q Consensus 82 ~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~--~~~l~~~~~~~---- 155 (311)
T Consensus 80 ------HADFGGEVERvL~MVDGvlLlVDA~EGPMPQTrFVL~KAL~~gLkPIVViNKiDrp~ARP~eV~d~vFDLF~~L 153 (609)
T TIGR01394 80 ------HADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFIEL 153 (609)
T ss_pred ------CCCCCCEEEEECEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf ------88788658873302405899985788898853478999995689369997134788788378875787888853
Q ss_pred ---HHCCCCCCCCCCCCCCC---------------CCHHHHHHHHHHHCCC
Q ss_conf ---10012334311000138---------------7426789999983662
Q gi|254780941|r 156 ---NKLVFIEKTFMVSATKG---------------HGCDDVLNYLCSTLPL 188 (311)
Q Consensus 156 ---~~~~~~~~i~~ISAk~g---------------~Gid~L~~~L~~~lpe 188 (311)
T Consensus 154 gA~deQLDF-P~vYASa~~G~A~l~~~~dg~~~~~~~m~PLFd~I~~hvPa 203 (609)
T TIGR01394 154 GADDEQLDF-PIVYASARAGWASLDKDKDGLDDDSEDMAPLFDAILRHVPA 203 (609)
T ss_pred CCCCCCCCH-HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 888001012-56766523672014466577887220178999898640688