HHsearch alignment for GI: 254780941 and conserved domain: TIGR02528
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=99.66 E-value=1.4e-16 Score=127.04 Aligned_cols=141 Identities=23% Similarity=0.356 Sum_probs=104.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCC-CHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798-40101235753210023455553
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG-~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
T Consensus 2 r~~f~G~~gCGKTTL~q~L~g~~~~--YKKT-------QAv-E~~~k~--~IDTPGEY~e-----nr~~Y~AL~vtaaDA 64 (144)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIK--YKKT-------QAV-EYKDKE--AIDTPGEYVE-----NRRYYSALIVTAADA 64 (144)
T ss_pred EEEEEECCCCCHHHHHHHCCCCCCC--EEEE-------EEE-EECCCC--CCCCCCCCCC-----CCCHHHHHHHHHHCC
T ss_conf 1788715888744354311687321--0233-------445-425888--6559850015-----752378888887210
Q ss_pred HHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 21001100001000000012234544287202578721101043457888864100123343110001387426789999
Q gi|254780941|r 103 DIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 (311)
Q Consensus 103 Diil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L 182 (311)
T Consensus 65 d~i~lV~~a~~~~~~f~PgF~~~f--~kK~~IG~vTK~DLA~~d~~i~r~~~~L~~AG~~~iF~~~~~d~~G~~~l~~yL 142 (144)
T TIGR02528 65 DVIALVQSATDEESRFSPGFASIF--VKKEVIGIVTKIDLAEADKDIERAKRLLETAGAEKIFEISSVDEKGIEELVDYL 142 (144)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCC--CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHH
T ss_conf 236677357764223785000236--788634788403788773479999999872365433165077804589999984
Q ss_pred H
Q ss_conf 9
Q gi|254780941|r 183 C 183 (311)
Q Consensus 183 ~ 183 (311)
T Consensus 143 ~ 143 (144)
T TIGR02528 143 N 143 (144)
T ss_pred C
T ss_conf 4