HHsearch alignment for GI: 254780941 and conserved domain: TIGR02836
>TIGR02836 spore_IV_A stage IV sporulation protein A; InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis . A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. .
Probab=98.09 E-value=2.5e-05 Score=54.37 Aligned_cols=172 Identities=22% Similarity=0.337 Sum_probs=104.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC----CE---------------EEECCCCCCEE------EEEEEEEEE-CCEEEEEEEC
Q ss_conf 8998338998688999998689----20---------------21058888602------127899973-9948999987
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA----KV---------------SIVTHKVQTTR------SIVRGIVSE-KESQIVFLDT 77 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~----~v---------------sivS~k~~TTr------~~i~gi~~~-~~~qiifvDT 77 (311)
T Consensus 19 YiGvVGpVRTGKSTfIKkFMeLlvLPNi~n~~~k~Ra~DELPQSaAGktimTTEPKFvPn~Avei~in~~~k~~vRLVDc 98 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNIENEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDC 98 (492)
T ss_pred EEEEECCCCCCCCCHHHHEEHEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEEEEEE
T ss_conf 89866274278521111100102238886111120231068877686802104878668851899864882078999986
Q ss_pred CCCH-HHCC----CCCCCCCCHHHHH----------------H-HHHHHHCCC-CHHH-----H-HHHCCHHHHHHHHHH
Q ss_conf 9840-1012----3575321002345----------------5-553210011-0000-----1-000000012234544
Q gi|254780941|r 78 PGIF-NAKD----SYHKLMIRLSWST----------------I-KHADIVCLV-VDSH-----R-ELKVNIHDLLKEIAK 128 (311)
Q Consensus 78 PG~~-~~~~----~l~~~~~~~~~~~----------------l-~~aDiil~V-vDa~-----~-~~~~~~~~il~~l~~ 128 (311)
T Consensus 99 VGY~V~GA~GY~ee~kprMv~TPWYd~eIPF~EAAEIGTrKVI~dHSTiG~lvTTDGsI~dI~RedYv~AEERVveELKe 178 (492)
T TIGR02836 99 VGYIVKGALGYEEEDKPRMVSTPWYDEEIPFEEAAEIGTRKVISDHSTIGLLVTTDGSITDIPREDYVEAEERVVEELKE 178 (492)
T ss_pred ECCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHCCCEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 23015785450027864011588888888723551237710115775078997117840346731340033577677640
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-CCH
Q ss_conf 28720257872110104345788886410012334311000138742678999998366223568964334-302
Q gi|254780941|r 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS-DLP 202 (311)
Q Consensus 129 ~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~T-d~~ 202 (311)
T Consensus 179 ~~KPFIilLNs~~P~~pE-T~~L~~eLe~KYDv-pV~~~~v-~~m~~~Di~~vL~~~LyE----FPi~evn~dLP 246 (492)
T TIGR02836 179 LNKPFIILLNSTHPLAPE-TKALRKELEEKYDV-PVLVVDV-LEMKIKDILSVLEKVLYE----FPILEVNIDLP 246 (492)
T ss_pred CCCCEEEEECCCCCCCHH-HHHHHHHHHHHCCC-CEEEEEC-CCCCHHHHHHHHHHHHHH----CCCEEEECCCC
T ss_conf 799679997688978865-79999986520884-4589640-002446699999985410----68403534784