HHsearch alignment for GI: 254780941 and conserved domain: cd00154
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.71 E-value=6.9e-17 Score=129.12 Aligned_cols=150 Identities=25% Similarity=0.294 Sum_probs=96.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860-212789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
T Consensus 2 Ki~vvG~~~vGKTsli~~~~~~~f~~-~~~~-Tig~d~~~~~~~~~~~~~~l~iwDt~G~e~--------~~~l~~~~~~ 71 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDE-NYKS-TIGVDFKSKTIEIDGKTVKLQIWDTAGQER--------FRSITPSYYR 71 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC-CCCC-CCCEEEEEEEEEECCEEEEEEEEECCCCHH--------HHHHHHHHHH
T ss_conf 89999969968999999997099999-8488-666479999999999999999997898265--------7788999975
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 53210011000010000-00012234544---28720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
T Consensus 72 ~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~iilvgnK~DL~~~~~v~~~~~~~~a~~~~~-~~~e~SAk~~~~i 150 (159)
T cd00154 72 GAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGL-LFFETSAKTGENV 150 (159)
T ss_pred HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 412756724489889999999999999986898882699997456301168999999999998699-7999876888198
Q ss_pred HHHHHHHHH
Q ss_conf 678999998
Q gi|254780941|r 176 DDVLNYLCS 184 (311)
Q Consensus 176 d~L~~~L~~ 184 (311)
T Consensus 151 ~~~F~~i~~ 159 (159)
T cd00154 151 EELFQSLAE 159 (159)
T ss_pred HHHHHHHHC
T ss_conf 999999869