HHsearch alignment for GI: 254780941 and conserved domain: cd00881
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.96 E-value=2.1e-28 Score=203.59 Aligned_cols=157 Identities=24% Similarity=0.288 Sum_probs=127.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCC---------------CCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCC
Q ss_conf 8998338998688999998689202105888---------------8602127899973994899998798401012357
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKV---------------QTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYH 88 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~---------------~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~ 88 (311)
T Consensus 1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDTPGh-------- 72 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGH-------- 72 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCCC--------
T ss_conf 989991799899999999997647235686258885057778886384132227999989989999969981--------
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC---------
Q ss_conf 53210023455553210011000010000000122345442872025787211010434578888641001---------
Q gi|254780941|r 89 KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLV--------- 159 (311)
Q Consensus 89 ~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~--------- 159 (311)
T Consensus 73 ~~f~~~~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~~~~~~ 152 (189)
T cd00881 73 EDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK 152 (189)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 88999999998646856999987989987899999999976998799998971877562999999999998753210232
Q ss_pred -------CCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf -------23343110001387426789999983662
Q gi|254780941|r 160 -------FIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 160 -------~~~~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
T Consensus 153 ~~~~~~~~~~piv~iSA~~G~gv~~Lld~i~~~lP~ 188 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred HHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 110125887759998886786979999999976879