HHsearch alignment for GI: 254780941 and conserved domain: cd01854
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.88 E-value=1.9e-09 Score=80.97 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=60.0
Q ss_pred HHHHHHHCCCCHHHHHH-HC-CHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 55532100110000100-00-00012234544287202578721101043457888864100123343110001387426
Q gi|254780941|r 99 IKHADIVCLVVDSHREL-KV-NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~-~~-~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
T Consensus 76 aANiD~v~IV~s~~~p~~~~~~idR~Lv~a~~~~i~pvivlnK~DL~~~~~~~~~~~~~~~-~g-y~v~~~S~~~~~g~~ 153 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALA-LG-YPVLAVSAKTGEGLD 153 (287)
T ss_pred EECCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCCHHHHHHHHHHHC-CC-CEEEEEECCCCCCHH
T ss_conf 9726689999526899899899999999999779968999986221994899999999872-99-849999668985889
Q ss_pred HHHHHHHHH
Q ss_conf 789999983
Q gi|254780941|r 177 DVLNYLCST 185 (311)
Q Consensus 177 ~L~~~L~~~ 185 (311)
T Consensus 154 ~L~~~l~~k 162 (287)
T cd01854 154 ELREYLKGK 162 (287)
T ss_pred HHHHHHCCC
T ss_conf 999874798