HHsearch alignment for GI: 254780941 and conserved domain: cd01856
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.64 E-value=5.8e-16 Score=123.12 Aligned_cols=92 Identities=25% Similarity=0.238 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 00234555532100110000100000001223454428720257872110104345788886410012334311000138
Q gi|254780941|r 93 RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 93 ~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
T Consensus 11 ~~~~~~l~~sDlIl~V~DaR~pl~~~~~~l~~~~~--~K~~ilV~NK~DL~~~~~~~~~~~~~~~~--~~~~~~~sa~~~ 86 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILG--NKPRIIVLNKADLADPKKTKKWLKYFESK--GEKVLFVNAKSG 86 (171)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHHHHCC--CCCEEEEECCCC
T ss_conf 99999998699999999898888765289999976--89889998555558978999999999807--996799842266
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 7426789999983662
Q gi|254780941|r 173 HGCDDVLNYLCSTLPL 188 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe 188 (311)
T Consensus 87 ~g~~~l~~~i~~~~~~ 102 (171)
T cd01856 87 KGVKKLLKAAKKLLKD 102 (171)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 5789999999997354