HHsearch alignment for GI: 254780941 and conserved domain: cd01858
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.68 E-value=1.3e-16 Score=127.45 Aligned_cols=60 Identities=27% Similarity=0.408 Sum_probs=48.9
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCC
Q ss_conf 685121899833899868899999868920210588886021278999739948999987984
Q gi|254780941|r 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 (311)
Q Consensus 18 ~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~ 80 (311)
T Consensus 98 ~~~~~i~v~ivG~PNVGKSSlIN~L~g~k~~~vs~~PG~Tr~~q~-i~-~-~~~i~liDTPGi 157 (157)
T cd01858 98 SDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY-IT-L-MKRIYLIDCPGV 157 (157)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEE-EE-E-CCCEEEEECCCC
T ss_conf 555646999982588533688988726735886598833777799-99-6-899999969099