HHsearch alignment for GI: 254780941 and conserved domain: cd01858
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.75 E-value=1.5e-08 Score=75.20 Aligned_cols=92 Identities=21% Similarity=0.226 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 2345555321001100001000000012234544--28720257872110104345788886410012334311000138
Q gi|254780941|r 95 SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 95 ~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
T Consensus 2 l~~~i~~aD~vl~V~DaR~p~ss~n~~l~~~lr~~~~~K~~i~VlNK~Dl~~~~~~~~w~~~l~~~~~-~~~~~~s~~~~ 80 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYP-TIAFHASINNP 80 (157)
T ss_pred HHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEEEECCCC
T ss_conf 88978759999999889888887898999998753799978999989447987899999998648897-39999532386
Q ss_pred CCHHHHHHHHHHHCC
Q ss_conf 742678999998366
Q gi|254780941|r 173 HGCDDVLNYLCSTLP 187 (311)
Q Consensus 173 ~Gid~L~~~L~~~lp 187 (311)
T Consensus 81 ~~~~~l~~~l~~~~~ 95 (157)
T cd01858 81 FGKGSLIQLLRQFSK 95 (157)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 468999999998765