HHsearch alignment for GI: 254780941 and conserved domain: cd01860
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.67 E-value=7.1e-16 Score=122.57 Aligned_cols=153 Identities=23% Similarity=0.268 Sum_probs=98.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECCE--EEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860-2127899973994--899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEKES--QIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~~~--qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
T Consensus 3 KivviGd~~vGKTsli~r~~~~~f~~--~~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e--------~~~~~~~~~~~ 72 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSE--NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE--------RYRSLAPMYYR 72 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC--CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHC
T ss_conf 99999959968999999994398999--868866678899999999999999999799971--------00278898851
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 532100110000100000-0012234544---28720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
T Consensus 73 ~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~~~nV 151 (163)
T cd01860 73 GAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGL-LFFETSAKTGENV 151 (163)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 677149998189979999999999999985598723677553357565089999999999998299-7999862659078
Q ss_pred HHHHHHHHHHCC
Q ss_conf 678999998366
Q gi|254780941|r 176 DDVLNYLCSTLP 187 (311)
Q Consensus 176 d~L~~~L~~~lp 187 (311)
T Consensus 152 ~e~F~~l~~~i~ 163 (163)
T cd01860 152 NELFTEIAKKLP 163 (163)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998583