HHsearch alignment for GI: 254780941 and conserved domain: cd01867

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.66  E-value=8.6e-16  Score=122.05  Aligned_cols=154  Identities=19%  Similarity=0.211  Sum_probs=99.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf             8998338998688999998689202105888860-21278999739--94899998798401012357532100234555
Q gi|254780941|r   24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK  100 (311)
Q Consensus        24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~  100 (311)
T Consensus         5 KivlvGd~~vGKTsli~r~~~~~f~~~-~-~~Tig~~~~~k~v~~~~~~i~l~iwDt~G~--------e~~~~~~~~y~~   74 (167)
T cd01867           5 KLLLIGDSGVGKSCLLLRFSEDSFNPS-F-ISTIGIDFKIRTIELDGKKIKLQIWDTAGQ--------ERFRTITTAYYR   74 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCC-C-CCCCCEEEEEEEEEECCEEEEEEEEECCCC--------CCHHHHHHHHHH
T ss_conf             999999999788999999960999998-6-898646889999999999999999989997--------001166799856


Q ss_pred             HHHHHCCCCHHHHHHHCC-HHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf             532100110000100000-0012234544---28720257872110104345-788886410012334311000138742
Q gi|254780941|r  101 HADIVCLVVDSHRELKVN-IHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC  175 (311)
Q Consensus       101 ~aDiil~VvDa~~~~~~~-~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi  175 (311)
T Consensus        75 ~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~~~e~~~~a~~~~~-~~~e~SAktg~nI  153 (167)
T cd01867          75 GAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGI-KFLETSAKANINV  153 (167)
T ss_pred             HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCCCHHHHHHHHHHHCC-EEEEECCCCCCCH
T ss_conf             505889955689879999999999999986699970576421245023077999999999998099-6999822579078


Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             6789999983662
Q gi|254780941|r  176 DDVLNYLCSTLPL  188 (311)
Q Consensus       176 d~L~~~L~~~lpe  188 (311)
T Consensus       154 ~e~F~~l~~~i~~  166 (167)
T cd01867         154 EEAFFTLAKDIKK  166 (167)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999970