HHsearch alignment for GI: 254780941 and conserved domain: cd01867
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.66 E-value=8.6e-16 Score=122.05 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=99.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860-21278999739--94899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
T Consensus 5 KivlvGd~~vGKTsli~r~~~~~f~~~-~-~~Tig~~~~~k~v~~~~~~i~l~iwDt~G~--------e~~~~~~~~y~~ 74 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSEDSFNPS-F-ISTIGIDFKIRTIELDGKKIKLQIWDTAGQ--------ERFRTITTAYYR 74 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC-C-CCCCCEEEEEEEEEECCEEEEEEEEECCCC--------CCHHHHHHHHHH
T ss_conf 999999999788999999960999998-6-898646889999999999999999989997--------001166799856
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 532100110000100000-0012234544---28720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
T Consensus 75 ~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~~~e~~~~a~~~~~-~~~e~SAktg~nI 153 (167)
T cd01867 75 GAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGI-KFLETSAKANINV 153 (167)
T ss_pred HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCCCHHHHHHHHHHHCC-EEEEECCCCCCCH
T ss_conf 505889955689879999999999999986699970576421245023077999999999998099-6999822579078
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 6789999983662
Q gi|254780941|r 176 DDVLNYLCSTLPL 188 (311)
Q Consensus 176 d~L~~~L~~~lpe 188 (311)
T Consensus 154 ~e~F~~l~~~i~~ 166 (167)
T cd01867 154 EEAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999970