HHsearch alignment for GI: 254780941 and conserved domain: cd01868
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.64 E-value=1.9e-15 Score=119.74 Aligned_cols=152 Identities=20% Similarity=0.234 Sum_probs=96.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602-12789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
T Consensus 5 Kiv~iGd~~VGKTsli~r~~~~~f~~-~~~~-Tig~~~~~k~i~~~~~~~~l~iwDtaG~e--------~~~~~~~~~~~ 74 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNEFNL-DSKS-TIGVEFATRSIQIDGKTIKAQIWDTAGQE--------RYRAITSAYYR 74 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC-CCCC-CCCEEEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHH
T ss_conf 99999999978999999997298999-8898-74478789999999999999999899972--------12678998733
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 532100110000100000-0012234544---28720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
T Consensus 75 ~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~Vs~~e~~~~a~~~~~-~~~E~SAk~g~nV 153 (165)
T cd01868 75 GAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGL-SFIETSALDGTNV 153 (165)
T ss_pred HCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 205148986269889999999999999985557735987023478688578889999999998599-7999678889298
Q ss_pred HHHHHHHHHHC
Q ss_conf 67899999836
Q gi|254780941|r 176 DDVLNYLCSTL 186 (311)
Q Consensus 176 d~L~~~L~~~l 186 (311)
T Consensus 154 ~e~F~~l~~~i 164 (165)
T cd01868 154 EEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999986