HHsearch alignment for GI: 254780941 and conserved domain: cd01874

>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.58  E-value=6.5e-14  Score=109.88  Aligned_cols=154  Identities=18%  Similarity=0.121  Sum_probs=96.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf             18998338998688999998689202105888860212789997399--4899998798401012357532100234555
Q gi|254780941|r   23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK  100 (311)
Q Consensus        23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~  100 (311)
T Consensus         2 vKvv~lGd~~VGKTsli~r~~~~~f~--~~y~pti~~~~~~~~~~~~~~v~l~iwDTaG~e~--------~~~l~~~~~~   71 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED--------YDRLRPLSYP   71 (175)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC--------CHHHHHHHHH
T ss_conf             79999899995889999999649899--9867863478999999999999999998999745--------1246588771


Q ss_pred             HHHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHHH-------------HHHHHHHHHCCCCCC
Q ss_conf             53210011000010000000--12234544--28720257872110104345-------------788886410012334
Q gi|254780941|r  101 HADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPERL-------------LEQAEIANKLVFIEK  163 (311)
Q Consensus       101 ~aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~l-------------~~~~~~~~~~~~~~~  163 (311)
T Consensus        72 ~~~~~ilvydv~d~~Sf~~i~~~w~~~i~~~~~~~p~iLVGnK~DL~~~~~~~~~~~~~~~r~V~~~eg~~lA~~~~~~~  151 (175)
T cd01874          72 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVK  151 (175)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf             38888999637987889999999999999829899889999872033566667776440265668999999999759959


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             31100013874267899999836
Q gi|254780941|r  164 TFMVSATKGHGCDDVLNYLCSTL  186 (311)
Q Consensus       164 i~~ISAk~g~Gid~L~~~L~~~l  186 (311)
T Consensus       152 y~EtSAk~g~nV~e~F~~~i~~A  174 (175)
T cd01874         152 YVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHH
T ss_conf             99913378959799999999986