HHsearch alignment for GI: 254780941 and conserved domain: cd01876
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=100.00 E-value=6.7e-35 Score=245.68 Aligned_cols=159 Identities=20% Similarity=0.265 Sum_probs=124.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCH--HHCCCCC---CCCCCHHHHH
Q ss_conf 9983389986889999986892-02105888860212789997399489999879840--1012357---5321002345
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAK-VSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--NAKDSYH---KLMIRLSWST 98 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~-vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~--~~~~~l~---~~~~~~~~~~ 98 (311)
T Consensus 2 IaivG~pN~GKSTL~N~L~~~~~~~~vs~~~gtTr~i~~--~-~~~~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~l~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--F-NVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEEEE--E-EECCEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 899989999999999999689962786078977852058--8-5387799996578401016877999999999999984
Q ss_pred HHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHH----CCCCCCCCCCCCCCCCC
Q ss_conf 55532100110000100000001223454428720257872110104345788886410----01233431100013874
Q gi|254780941|r 99 IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANK----LVFIEKTFMVSATKGHG 174 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~----~~~~~~i~~ISAk~g~G 174 (311)
T Consensus 79 ~~~~~~vi~viD~~~~~~~~d~~i~~~l~~~~kp~iiVlNKiDlv~~~~~~~~~~~~~~~l~~~~~~~~ii~iSA~~g~g 158 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQG 158 (170)
T ss_pred HHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 06334999999632237486899999998769987999986753787789999999999874217998399998899977
Q ss_pred HHHHHHHHHHHC
Q ss_conf 267899999836
Q gi|254780941|r 175 CDDVLNYLCSTL 186 (311)
Q Consensus 175 id~L~~~L~~~l 186 (311)
T Consensus 159 i~~L~~~I~~~L 170 (170)
T cd01876 159 IDELRALIEKWL 170 (170)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999859