HHsearch alignment for GI: 254780941 and conserved domain: cd01884

>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76  E-value=2.8e-18  Score=138.12  Aligned_cols=158  Identities=22%  Similarity=0.152  Sum_probs=108.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCE---EE-------ECC-----CCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCC
Q ss_conf             1899833899868899999868920---21-------058-----88860212789997399489999879840101235
Q gi|254780941|r   23 GCVALVGATNAGKSTLVNRFVGAKV---SI-------VTH-----KVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSY   87 (311)
Q Consensus        23 g~VaivG~pN~GKSTL~N~l~g~~v---si-------vS~-----k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l   87 (311)
T Consensus         3 ~Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~~~~~~~IDtPGH-------   75 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGH-------   75 (195)
T ss_pred             EEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEEECCCEEEEECCCCCH-------
T ss_conf             7999996058869899999999886634444112001005466650588614418999608816996268960-------


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCE-EEEEECCCHHHHHHHHHHH----HHHHCCCC-
Q ss_conf             75321002345555321001100001000000012234544287202-5787211010434578888----64100123-
Q gi|254780941|r   88 HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI-LILNKIDCVKPERLLEQAE----IANKLVFI-  161 (311)
Q Consensus        88 ~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~I-iVlNKiDlv~~~~l~~~~~----~~~~~~~~-  161 (311)
T Consensus        76 -~dF~~~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~~~~~~~~v~~ei~~~l~~~g~~  154 (195)
T cd01884          76 -ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFD  154 (195)
T ss_pred             -HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             -7788899863511362689985277874789999999998099962799968778987899999999999999842999


Q ss_pred             ---CCCCCCCCCCCC----------CHHHHHHHHHHHCCC
Q ss_conf             ---343110001387----------426789999983662
Q gi|254780941|r  162 ---EKTFMVSATKGH----------GCDDVLNYLCSTLPL  188 (311)
Q Consensus       162 ---~~i~~ISAk~g~----------Gid~L~~~L~~~lpe  188 (311)
T Consensus       155 ~~~~p~ip~Sa~~g~~~~~~~~~~~~i~~Lldai~~~iP~  194 (195)
T cd01884         155 GDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSYIPT  194 (195)
T ss_pred             CCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             5568299977387535788875536999999999964899