HHsearch alignment for GI: 254780941 and conserved domain: cd01884
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=2.8e-18 Score=138.12 Aligned_cols=158 Identities=22% Similarity=0.152 Sum_probs=108.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCE---EE-------ECC-----CCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCC
Q ss_conf 1899833899868899999868920---21-------058-----88860212789997399489999879840101235
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKV---SI-------VTH-----KVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSY 87 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~v---si-------vS~-----k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l 87 (311)
T Consensus 3 ~Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~~~~~~~IDtPGH------- 75 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGH------- 75 (195)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEEECCCEEEEECCCCCH-------
T ss_conf 7999996058869899999999886634444112001005466650588614418999608816996268960-------
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCE-EEEEECCCHHHHHHHHHHH----HHHHCCCC-
Q ss_conf 75321002345555321001100001000000012234544287202-5787211010434578888----64100123-
Q gi|254780941|r 88 HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI-LILNKIDCVKPERLLEQAE----IANKLVFI- 161 (311)
Q Consensus 88 ~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~I-iVlNKiDlv~~~~l~~~~~----~~~~~~~~- 161 (311)
T Consensus 76 -~dF~~~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~~~~~~~~v~~ei~~~l~~~g~~ 154 (195)
T cd01884 76 -ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFD 154 (195)
T ss_pred -HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf -7788899863511362689985277874789999999998099962799968778987899999999999999842999
Q ss_pred ---CCCCCCCCCCCC----------CHHHHHHHHHHHCCC
Q ss_conf ---343110001387----------426789999983662
Q gi|254780941|r 162 ---EKTFMVSATKGH----------GCDDVLNYLCSTLPL 188 (311)
Q Consensus 162 ---~~i~~ISAk~g~----------Gid~L~~~L~~~lpe 188 (311)
T Consensus 155 ~~~~p~ip~Sa~~g~~~~~~~~~~~~i~~Lldai~~~iP~ 194 (195)
T cd01884 155 GDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSYIPT 194 (195)
T ss_pred CCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 5568299977387535788875536999999999964899