HHsearch alignment for GI: 254780941 and conserved domain: cd01887
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.95 E-value=1.3e-27 Score=198.47 Aligned_cols=154 Identities=24% Similarity=0.253 Sum_probs=114.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEE---EEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 899833899868899999868920210588886021278---99973994899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR---GIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~---gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
T Consensus 2 ~VaivG~~n~GKSTL~n~L~~~~~~~~-~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPGh~~--------f~~~~~~~~~ 72 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA--------FTNMRARGAS 72 (168)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCEE-ECCCCEEEECEEEEEEEECCCCEEEEEECCCCHH--------HHHHHHHHHH
T ss_conf 899994899859899999858675045-1698168715399998825887189998998167--------7999999986
Q ss_pred HHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHH--HHHHHHHHHH-----HHCCCCCCCCCCCCCCCC
Q ss_conf 532100110000100000001223454428720257872110104--3457888864-----100123343110001387
Q gi|254780941|r 101 HADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP--ERLLEQAEIA-----NKLVFIEKTFMVSATKGH 173 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~--~~l~~~~~~~-----~~~~~~~~i~~ISAk~g~ 173 (311)
T Consensus 73 ~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~tG~ 152 (168)
T cd01887 73 LTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE 152 (168)
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCC
T ss_conf 26889999864667545899999999876997899998930898798999999999754524552898759999899998
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 4267899999836
Q gi|254780941|r 174 GCDDVLNYLCSTL 186 (311)
Q Consensus 174 Gid~L~~~L~~~l 186 (311)
T Consensus 153 gi~~L~~~i~~~a 165 (168)
T cd01887 153 GIDDLLEAILLLA 165 (168)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999997