HHsearch alignment for GI: 254780941 and conserved domain: cd01893
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.64 E-value=4.2e-15 Score=117.60 Aligned_cols=152 Identities=20% Similarity=0.194 Sum_probs=96.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE--CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973--9948999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE--KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~--~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
T Consensus 2 Kiv~vGd~~VGKTsli~r~~~~~F~--~~~~-~t~~~~~~~~~~~~~~v~l~i~DtaG~e~--------~~~~~~~~~~~ 70 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--ENVP-RVLPEITIPADVTPERVPTTIVDTSSRPQ--------DRANLAAEIRK 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCC-CCCCCEEEEEEECCEEEEEEEEECCCCCC--------CCHHHHHHHCC
T ss_conf 8999999998999999999849788--8777-63456899999889099999998998723--------02457987368
Q ss_pred HHHHCCCCHHHHHHHCCHH--HHHHHHH--HCCCCCEEEEEECCCHHHHHHHH---H-HHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 3210011000010000000--1223454--42872025787211010434578---8-8864100123343110001387
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNIH--DLLKEIA--KRSSRLILILNKIDCVKPERLLE---Q-AEIANKLVFIEKTFMVSATKGH 173 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~~--~il~~l~--~~~~p~IiVlNKiDlv~~~~l~~---~-~~~~~~~~~~~~i~~ISAk~g~ 173 (311)
T Consensus 71 a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvGNK~DL~~~r~~~~~e~~~~~~~~~~~~~~~~~EtSAktg~ 150 (166)
T cd01893 71 ANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 98899997089877899999999999998689996899998865400250335889999999973074889990658891
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 4267899999836
Q gi|254780941|r 174 GCDDVLNYLCSTL 186 (311)
Q Consensus 174 Gid~L~~~L~~~l 186 (311)
T Consensus 151 nV~e~F~~~~k~~ 163 (166)
T cd01893 151 NVSEVFYYAQKAV 163 (166)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9899999999998