HHsearch alignment for GI: 254780941 and conserved domain: cd01894
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=100.00 E-value=4.2e-40 Score=279.31 Aligned_cols=157 Identities=29% Similarity=0.396 Sum_probs=142.4
Q ss_pred EEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98338998688999998689202105888860212789997399489999879840101235753210023455553210
Q gi|254780941|r 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIV 105 (311)
Q Consensus 26 aivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDii 105 (311)
T Consensus 1 aivG~pN~GKSsL~N~l~~~~~~ivs~~~gtTr~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~i~~ad~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEE
T ss_conf 90489998899999999588753540799935667899999999889998578755566067899999999999865907
Q ss_pred CCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 01100001000000012234544287202578721101043457888864100123343110001387426789999983
Q gi|254780941|r 106 CLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 (311)
Q Consensus 106 l~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~ 185 (311)
T Consensus 81 l~viDa~~~~~~~d~~i~~~l~~~~kp~i~v~NK~D~~~~~~~~~~~---~~-l~~~~~i~iSA~~g~Gid~L~~~I~~~ 156 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDEAAEF---YS-LGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHH---HH-CCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 99998999999899999999998479809999787165864569999---96-599975999965894999999999965
Q ss_pred C
Q ss_conf 6
Q gi|254780941|r 186 L 186 (311)
Q Consensus 186 l 186 (311)
T Consensus 157 L 157 (157)
T cd01894 157 L 157 (157)
T ss_pred C
T ss_conf 9