HHsearch alignment for GI: 254780941 and conserved domain: cd01896
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.97 E-value=2.1e-31 Score=223.00 Aligned_cols=155 Identities=28% Similarity=0.337 Sum_probs=120.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798401012357532100234555532
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD 103 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aD 103 (311)
T Consensus 2 ~V~LVG~PN~GKSTLln~LT~a~-~~v~~ypfTT~~pi~g~~~~~~~~iqlvDtPGli~~a~-~g~g~g~~~l~~~r~aD 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAA-DGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCC-CCCCHHHHHHHHHHHCC
T ss_conf 59999999999999999997899-54369897875747779998998999996730024633-33206899999987589
Q ss_pred HHCCCCHHHHHHHCCH----------------------------------------------HHHHHHHH----------
Q ss_conf 1001100001000000----------------------------------------------01223454----------
Q gi|254780941|r 104 IVCLVVDSHRELKVNI----------------------------------------------HDLLKEIA---------- 127 (311)
Q Consensus 104 iil~VvDa~~~~~~~~----------------------------------------------~~il~~l~---------- 127 (311)
T Consensus 80 ~il~VvD~~~~~~~~~~i~~eLe~~gi~l~~~~~~v~i~~~~~~gi~i~~~~~~~~~~~~~v~~il~e~~i~~a~v~i~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf 99999847982667899999998605110357876257771358678604566666888999999998276764378605
Q ss_pred --------------HCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf --------------428720257872110104345788886410012334311000138742678999998366
Q gi|254780941|r 128 --------------KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 (311)
Q Consensus 128 --------------~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lp 187 (311)
T Consensus 160 ~~t~dd~~d~i~~n~~y~P~i~V~NKiDl~~~ee~~~----~---~~~~~~i~ISA~~g~gld~L~~~I~~~L~ 226 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----L---ARQPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CCCHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHH----H---HCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7888898998735767673799997403699899998----6---46798599988889898999999999839