HHsearch alignment for GI: 254780941 and conserved domain: cd03112
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.50 E-value=0.00023 Score=48.08 Aligned_cols=115 Identities=20% Similarity=0.267 Sum_probs=58.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC----CEEEECCC--------------CCCEEEEEEE-EEEE------------------
Q ss_conf 998338998688999998689----20210588--------------8860212789-9973------------------
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGA----KVSIVTHK--------------VQTTRSIVRG-IVSE------------------ 67 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~----~vsivS~k--------------~~TTr~~i~g-i~~~------------------ 67 (311)
T Consensus 3 ~iitGFLGaGKTTll~~lL~~~~~~~~avIvNEfG~~~ID~~ll~~~~~~v~el~~GCiCCs~~~dl~~~l~~l~~~~~~ 82 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERLDA 82 (158)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 89984888999999999984788997799970765546316676378824999338714652251589999999997651
Q ss_pred --CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCC--HHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf --994899998798401012357532100234555532100110000100000--001223454428720257872110
Q gi|254780941|r 68 --KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILILNKIDC 142 (311)
Q Consensus 68 --~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~--~~~il~~l~~~~~p~IiVlNKiDl 142 (311)
T Consensus 83 ~~~~~d~iiIE~SGla~P~~i~~~~~~~~~l~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD---~ivlnK~DL 158 (158)
T cd03112 83 GKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD---RILLNKTDL 158 (158)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHCCHHHHCEEECCCEEEEECHHHHHHHHHCCHHHHHHHHHCC---EEEEECCCC
T ss_conf 5788788999636878828999988607143210743876999818987764324469999999689---999966779