HHsearch alignment for GI: 254780941 and conserved domain: cd04102

>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.20  E-value=1.6e-10  Score=87.86  Aligned_cols=152  Identities=14%  Similarity=0.111  Sum_probs=88.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCEEE-ECCCCCCEEEEEEEEEEE-------CCEEEEEEECCCCHHHCCCCCCCCCCHH
Q ss_conf             89983389986889999986892021-058888602127899973-------9948999987984010123575321002
Q gi|254780941|r   24 CVALVGATNAGKSTLVNRFVGAKVSI-VTHKVQTTRSIVRGIVSE-------KESQIVFLDTPGIFNAKDSYHKLMIRLS   95 (311)
Q Consensus        24 ~VaivG~pN~GKSTL~N~l~g~~vsi-vS~k~~TTr~~i~gi~~~-------~~~qiifvDTPG~~~~~~~l~~~~~~~~   95 (311)
T Consensus         2 KIlllGDsgVGKTSL~~~~~~~~f~~~~~~TiG~~v~~--k~~~~~~~~~~~k~~~l~lWDtaGq--------ery~sl~   71 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDV--KHHTYKEGTPEEKTFFVELWDVGGS--------ESVKSTR   71 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEE--EEEEECCCCCCCCEEEEEEEECCCC--------HHHHHHH
T ss_conf             89999999989999999998398888888850367899--9999337876783899999989987--------7577678


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHCC-HHHHHHHH----------------------HHCCCCCEEEEEECCCHHHHHH----
Q ss_conf             34555532100110000100000-00122345----------------------4428720257872110104345----
Q gi|254780941|r   96 WSTIKHADIVCLVVDSHRELKVN-IHDLLKEI----------------------AKRSSRLILILNKIDCVKPERL----  148 (311)
Q Consensus        96 ~~~l~~aDiil~VvDa~~~~~~~-~~~il~~l----------------------~~~~~p~IiVlNKiDlv~~~~l----  148 (311)
T Consensus        72 ~~yYr~a~gvILVyDvTnr~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~~r~~~~~~  151 (202)
T cd04102          72 AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNL  151 (202)
T ss_pred             HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCCCCCCH
T ss_conf             99758898999999894989998699999999753676665455666555333467897589997606524343555423


Q ss_pred             -HHHHHHHHHCCC---------CCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             -788886410012---------3343110001387426789999983
Q gi|254780941|r  149 -LEQAEIANKLVF---------IEKTFMVSATKGHGCDDVLNYLCST  185 (311)
Q Consensus       149 -~~~~~~~~~~~~---------~~~i~~ISAk~g~Gid~L~~~L~~~  185 (311)
T Consensus       152 ~~~~~~~ia~q~~~eei~~~c~~~~~~~~~~~~~~kl~~ff~~vie~  198 (202)
T cd04102         152 VLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK  198 (202)
T ss_pred             HHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             55530257775166788874568440034675516899999999888