HHsearch alignment for GI: 254780941 and conserved domain: cd04102
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.20 E-value=1.6e-10 Score=87.86 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=88.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEE-ECCCCCCEEEEEEEEEEE-------CCEEEEEEECCCCHHHCCCCCCCCCCHH
Q ss_conf 89983389986889999986892021-058888602127899973-------9948999987984010123575321002
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSI-VTHKVQTTRSIVRGIVSE-------KESQIVFLDTPGIFNAKDSYHKLMIRLS 95 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsi-vS~k~~TTr~~i~gi~~~-------~~~qiifvDTPG~~~~~~~l~~~~~~~~ 95 (311)
T Consensus 2 KIlllGDsgVGKTSL~~~~~~~~f~~~~~~TiG~~v~~--k~~~~~~~~~~~k~~~l~lWDtaGq--------ery~sl~ 71 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDV--KHHTYKEGTPEEKTFFVELWDVGGS--------ESVKSTR 71 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEE--EEEEECCCCCCCCEEEEEEEECCCC--------HHHHHHH
T ss_conf 89999999989999999998398888888850367899--9999337876783899999989987--------7577678
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCC-HHHHHHHH----------------------HHCCCCCEEEEEECCCHHHHHH----
Q ss_conf 34555532100110000100000-00122345----------------------4428720257872110104345----
Q gi|254780941|r 96 WSTIKHADIVCLVVDSHRELKVN-IHDLLKEI----------------------AKRSSRLILILNKIDCVKPERL---- 148 (311)
Q Consensus 96 ~~~l~~aDiil~VvDa~~~~~~~-~~~il~~l----------------------~~~~~p~IiVlNKiDlv~~~~l---- 148 (311)
T Consensus 72 ~~yYr~a~gvILVyDvTnr~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~~r~~~~~~ 151 (202)
T cd04102 72 AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNL 151 (202)
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCCCCCCH
T ss_conf 99758898999999894989998699999999753676665455666555333467897589997606524343555423
Q ss_pred -HHHHHHHHHCCC---------CCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -788886410012---------3343110001387426789999983
Q gi|254780941|r 149 -LEQAEIANKLVF---------IEKTFMVSATKGHGCDDVLNYLCST 185 (311)
Q Consensus 149 -~~~~~~~~~~~~---------~~~i~~ISAk~g~Gid~L~~~L~~~ 185 (311)
T Consensus 152 ~~~~~~~ia~q~~~eei~~~c~~~~~~~~~~~~~~kl~~ff~~vie~ 198 (202)
T cd04102 152 VLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred HHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 55530257775166788874568440034675516899999999888