HHsearch alignment for GI: 254780941 and conserved domain: cd04110
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.63 E-value=3.2e-15 Score=118.37 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=99.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
T Consensus 8 KIvlvGd~~VGKTSli~r~~~~~F~~-~~~~Tig~d~~~k~v~i~~~~v~l~iwDtaGqe--------~~~~l~~~~~~~ 78 (199)
T cd04110 8 KLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGERVKLQIWDTAGQE--------RFRTITSTYYRG 78 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCC--------CCCCCHHHHHHC
T ss_conf 99999979988899999995099999-868975558789999999999999999899981--------235352666424
Q ss_pred HHHHCCCCHHHHHHHC-CHHHHHHHHHH--CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 3210011000010000-00012234544--28720257872110104345-78888641001233431100013874267
Q gi|254780941|r 102 ADIVCLVVDSHRELKV-NIHDLLKEIAK--RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDD 177 (311)
Q Consensus 102 aDiil~VvDa~~~~~~-~~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid~ 177 (311)
T Consensus 79 a~~~ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~ilVGNK~Dl~~~r~v~~~e~~~~a~~~~-~~f~E~SAktg~nV~e 157 (199)
T cd04110 79 THGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMG-ISLFETSAKENINVEE 157 (199)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCC-CEEEEEECCCCCCHHH
T ss_conf 654238971798899999999999999759987579998855447546999999999999869-9799986899929899
Q ss_pred HHHHHHHHCCC
Q ss_conf 89999983662
Q gi|254780941|r 178 VLNYLCSTLPL 188 (311)
Q Consensus 178 L~~~L~~~lpe 188 (311)
T Consensus 158 ~F~~i~~~i~~ 168 (199)
T cd04110 158 MFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999