HHsearch alignment for GI: 254780941 and conserved domain: cd04110

>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.63  E-value=3.2e-15  Score=118.37  Aligned_cols=155  Identities=19%  Similarity=0.163  Sum_probs=99.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r   24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH  101 (311)
Q Consensus        24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~  101 (311)
T Consensus         8 KIvlvGd~~VGKTSli~r~~~~~F~~-~~~~Tig~d~~~k~v~i~~~~v~l~iwDtaGqe--------~~~~l~~~~~~~   78 (199)
T cd04110           8 KLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGERVKLQIWDTAGQE--------RFRTITSTYYRG   78 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCC--------CCCCCHHHHHHC
T ss_conf             99999979988899999995099999-868975558789999999999999999899981--------235352666424


Q ss_pred             HHHHCCCCHHHHHHHC-CHHHHHHHHHH--CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf             3210011000010000-00012234544--28720257872110104345-78888641001233431100013874267
Q gi|254780941|r  102 ADIVCLVVDSHRELKV-NIHDLLKEIAK--RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDD  177 (311)
Q Consensus       102 aDiil~VvDa~~~~~~-~~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid~  177 (311)
T Consensus        79 a~~~ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~ilVGNK~Dl~~~r~v~~~e~~~~a~~~~-~~f~E~SAktg~nV~e  157 (199)
T cd04110          79 THGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMG-ISLFETSAKENINVEE  157 (199)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCC-CEEEEEECCCCCCHHH
T ss_conf             654238971798899999999999999759987579998855447546999999999999869-9799986899929899


Q ss_pred             HHHHHHHHCCC
Q ss_conf             89999983662
Q gi|254780941|r  178 VLNYLCSTLPL  188 (311)
Q Consensus       178 L~~~L~~~lpe  188 (311)
T Consensus       158 ~F~~i~~~i~~  168 (199)
T cd04110         158 MFNCITELVLR  168 (199)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999