HHsearch alignment for GI: 254780941 and conserved domain: cd04113
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.66 E-value=8e-16 Score=122.22 Aligned_cols=152 Identities=19% Similarity=0.196 Sum_probs=98.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860-212789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
T Consensus 2 Kivl~Gd~~vGKTsli~r~~~~~f~~~--~~~Tig~~~~~k~~~~~~~~~~l~iwDtaG~--------e~~~~~~~~~~~ 71 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKED--SQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ--------ERFRSVTRSYYR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC--CCCCCCEEEEEEEEEECCEEEEEEEEECCCC--------HHHHHHHHHHHH
T ss_conf 899999499679999999972989998--7997645789999999999999999989997--------012267899840
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 53210011000010000-00012234544---28720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
T Consensus 72 ~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVgNK~Dl~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~~~nV 150 (161)
T cd04113 72 GAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGL-LFLETSALTGENV 150 (161)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 577789953689889999999999999986799964986034344000378899999999998599-7999741569058
Q ss_pred HHHHHHHHHHC
Q ss_conf 67899999836
Q gi|254780941|r 176 DDVLNYLCSTL 186 (311)
Q Consensus 176 d~L~~~L~~~l 186 (311)
T Consensus 151 ~e~F~~la~~i 161 (161)
T cd04113 151 EEAFLKCARSI 161 (161)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999709