HHsearch alignment for GI: 254780941 and conserved domain: cd04119
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.64 E-value=1.9e-15 Score=119.75 Aligned_cols=152 Identities=22% Similarity=0.270 Sum_probs=96.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860-212789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
T Consensus 2 KivvvG~~~vGKTSLi~r~~~~~f~~-~y~p-Tig~~~~~k~~~~~~~~~~l~iwDt~G~~~--------~~~~~~~~~~ 71 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLP-TIGIDYGVKKVSVRNKEVRVNFFDLSGHPE--------YLEVRNEFYK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC-CCCC-CCCEEEEEEEEEECCEEEEEEEEECCCCHH--------HHHHHHHHHH
T ss_conf 89999959956899999996399999-8589-765577799999999999999998999764--------7899999987
Q ss_pred HHHHHCCCCHHHHHHHCCH-HHHHHHHHH--------CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 5321001100001000000-012234544--------28720257872110104345-7888864100123343110001
Q gi|254780941|r 101 HADIVCLVVDSHRELKVNI-HDLLKEIAK--------RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSAT 170 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~~-~~il~~l~~--------~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk 170 (311)
T Consensus 72 ~ad~~ilvydit~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E~Sak 150 (168)
T cd04119 72 DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGF-KYFETSAC 150 (168)
T ss_pred HCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCC-EEEEECCC
T ss_conf 47788999508974448999999999999824534566862999854034442578899999999998699-89998857
Q ss_pred CCCCHHHHHHHHHHHC
Q ss_conf 3874267899999836
Q gi|254780941|r 171 KGHGCDDVLNYLCSTL 186 (311)
Q Consensus 171 ~g~Gid~L~~~L~~~l 186 (311)
T Consensus 151 ~g~~V~e~F~~l~~~i 166 (168)
T cd04119 151 TGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 7908899999999997