HHsearch alignment for GI: 254780941 and conserved domain: cd04125
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=1e-15 Score=121.53 Aligned_cols=154 Identities=21% Similarity=0.190 Sum_probs=99.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860-212789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
T Consensus 2 KivvvGd~~VGKTsli~r~~~~~f~~--~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e--------~~~~l~~~~~~ 71 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSE--STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE--------RFRSLNNSYYR 71 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC--CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHC
T ss_conf 79999999978999999995196899--868865403579999999999999999899971--------04578999863
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHHH---HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 532100110000100000-001223454---428720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEIA---KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l~---~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
T Consensus 72 ~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAktg~nV 150 (188)
T cd04125 72 GAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAKQSINV 150 (188)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 786799980389878999999999999987898662451001344766067999999999998699-8999747889098
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 6789999983662
Q gi|254780941|r 176 DDVLNYLCSTLPL 188 (311)
Q Consensus 176 d~L~~~L~~~lpe 188 (311)
T Consensus 151 ~e~F~~l~~~i~~ 163 (188)
T cd04125 151 EEAFILLVKLIIK 163 (188)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999