HHsearch alignment for GI: 254780941 and conserved domain: cd04129

>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.57  E-value=5.8e-14  Score=110.20  Aligned_cols=153  Identities=18%  Similarity=0.172  Sum_probs=96.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r   24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH  101 (311)
Q Consensus        24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~  101 (311)
T Consensus         3 KivllGd~~VGKTsLi~r~~~~~f~--~~y~pTi~~~~~~~i~v~~~~v~l~iwDTaG~e~-----~~~~~---~~~~~~   72 (187)
T cd04129           3 KLVIVGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEE-----YERLR---PLSYSK   72 (187)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC-----CCCCC---CCEECC
T ss_conf             9999998997689999999829899--9878866789899999999999999997888703-----45460---412338


Q ss_pred             HHHHCCCCHHHHHHHCC-HH-HHHHHHHH--CCCCCEEEEEECCCHHH----------HH-HHHHHHHHHHCCCCCCCCC
Q ss_conf             32100110000100000-00-12234544--28720257872110104----------34-5788886410012334311
Q gi|254780941|r  102 ADIVCLVVDSHRELKVN-IH-DLLKEIAK--RSSRLILILNKIDCVKP----------ER-LLEQAEIANKLVFIEKTFM  166 (311)
Q Consensus       102 aDiil~VvDa~~~~~~~-~~-~il~~l~~--~~~p~IiVlNKiDlv~~----------~~-l~~~~~~~~~~~~~~~i~~  166 (311)
T Consensus        73 a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilVGnK~DL~~~~~~~~~~~~~r~V~~~~g~~~a~~~~~~~y~E  152 (187)
T cd04129          73 AHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYME  152 (187)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             85899970269866799999999999998587998899988600113411211122315578999999999849978999


Q ss_pred             CCCCCCCCHHHHHHHHHHHC
Q ss_conf             00013874267899999836
Q gi|254780941|r  167 VSATKGHGCDDVLNYLCSTL  186 (311)
Q Consensus       167 ISAk~g~Gid~L~~~L~~~l  186 (311)
T Consensus       153 tSAk~~~nV~e~F~~~~r~~  172 (187)
T cd04129         153 CSALTGEGVDDVFEAATRAA  172 (187)
T ss_pred             ECCCCCCCHHHHHHHHHHHH
T ss_conf             68899979899999999999