HHsearch alignment for GI: 254780941 and conserved domain: cd04132
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.68 E-value=6.5e-16 Score=122.84 Aligned_cols=153 Identities=17% Similarity=0.153 Sum_probs=97.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEE-EEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 998338998688999998689202105888860212-789997399--48999987984010123575321002345555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI-VRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~-i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~F~--~~~~pTi~~~~~~~~~~~~~~~v~l~iwDtaG~e~-----~~~l---~~~~~~~ 72 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----YDRL---RPLSYPD 72 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCC-----CCCC---HHHHHHH
T ss_conf 999994997699999999639899--97589664799999995499899999996999711-----0534---3445300
Q ss_pred HHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHH-----HHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 3210011000010000000--12234544--2872025787211010434-----5788886410012334311000138
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPER-----LLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~-----l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
T Consensus 73 a~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~~~~~~~~~v~~e~~~~~a~~~~~~~y~EtSAk~g 152 (187)
T cd04132 73 VDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTM 152 (187)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 34888950368767799999999999998689999799998722122122376578999999999859978999576889
Q ss_pred CCHHHHHHHHHHHCC
Q ss_conf 742678999998366
Q gi|254780941|r 173 HGCDDVLNYLCSTLP 187 (311)
Q Consensus 173 ~Gid~L~~~L~~~lp 187 (311)
T Consensus 153 ~nV~e~F~~l~~~il 167 (187)
T cd04132 153 ENVEEVFDTAIEEAL 167 (187)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 298999999999998