HHsearch alignment for GI: 254780941 and conserved domain: cd04133
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.60 E-value=2.6e-14 Score=112.42 Aligned_cols=153 Identities=17% Similarity=0.178 Sum_probs=97.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
T Consensus 3 KivllGd~~VGKTsL~~rf~~~~F~--~~~~pTi~~~~~~~i~v~~~~~~l~iwDTaG~e~--------~~~l~~~~y~~ 72 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQED--------YNRLRPLSYRG 72 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC--------CCHHHHHHHCC
T ss_conf 9999899997799999999659899--9867853589999999999899999997999765--------42468987267
Q ss_pred HHHHCCCCHHHHHHHCC--HHHHHHHHHH--CCCCCEEEEEECCCHHHHHH-----------HHHHHHHHHCCCCCCCCC
Q ss_conf 32100110000100000--0012234544--28720257872110104345-----------788886410012334311
Q gi|254780941|r 102 ADIVCLVVDSHRELKVN--IHDLLKEIAK--RSSRLILILNKIDCVKPERL-----------LEQAEIANKLVFIEKTFM 166 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~--~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l-----------~~~~~~~~~~~~~~~i~~ 166 (311)
T Consensus 73 a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~~~~y~E 152 (176)
T cd04133 73 ADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIE 152 (176)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 87579999789878999999999999998684998899998632021222333302467777999999999779978999
Q ss_pred CCCCCCCCHHHHHHHHHHHC
Q ss_conf 00013874267899999836
Q gi|254780941|r 167 VSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 167 ISAk~g~Gid~L~~~L~~~l 186 (311)
T Consensus 153 tSAk~~~nV~e~F~~~~~~i 172 (176)
T cd04133 153 CSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred ECCCCCCCHHHHHHHHHHHH
T ss_conf 47898809899999999998