HHsearch alignment for GI: 254780941 and conserved domain: cd04134
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.59 E-value=4.5e-14 Score=110.89 Aligned_cols=153 Identities=17% Similarity=0.158 Sum_probs=96.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEECCE--EEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 9983389986889999986892021058888602-127899973994--8999987984010123575321002345555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKES--QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~~~~--qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~F~--~~-y~~Ti~~~~~~~~~v~~~~v~l~iwDTaGqe--------~~~~i~~~~y~~ 71 (189)
T cd04134 3 VVVLGDGACGKTSLLNVFTRGYFP--QV-YEPTVFENYVHDIFVDGLHIELSLWDTAGQE--------EFDRLRSLSYAD 71 (189)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC--CC-CCCCEEEEEEEEEEECCEEEEEEEEECCCCC--------CCCHHHHHHHCC
T ss_conf 999997997699999999709999--98-6883789999999999999999998477850--------000355676437
Q ss_pred HHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHHHHH-------------HHHHHHHCCCCCCC
Q ss_conf 3210011000010000000--12234544--2872025787211010434578-------------88864100123343
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPERLLE-------------QAEIANKLVFIEKT 164 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~-------------~~~~~~~~~~~~~i 164 (311)
T Consensus 72 a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~~Ak~~~~~~y 151 (189)
T cd04134 72 TDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRY 151 (189)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 86459999789878999999999999997497997899998800465323567776630466589999999998299789
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 110001387426789999983662
Q gi|254780941|r 165 FMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 165 ~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
T Consensus 152 ~EtSAkt~~nV~e~F~~lar~~l~ 175 (189)
T cd04134 152 LECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 996806794989999999999973