HHsearch alignment for GI: 254780941 and conserved domain: cd04142

>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.57  E-value=2.3e-14  Score=112.80  Aligned_cols=165  Identities=16%  Similarity=0.150  Sum_probs=100.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf             8998338998688999998689202105888860-212789997399--4899998798401012357532100234555
Q gi|254780941|r   24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK  100 (311)
Q Consensus        24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~  100 (311)
T Consensus         2 KivvlG~~gVGKTsli~rf~~~~F~~-~y~p-Tig~~~~~k~v~~dg~~~~l~IwDtag~~~~~~tagqe~~~~r~~~ir   79 (198)
T cd04142           2 RVAVLGAPGVGKTAIVRQFLAQEFPE-EYIP-TEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR   79 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCC-CCCC-CCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             89999979989999999997198888-7478-466167899999999999999995877304555652123555644014


Q ss_pred             HHHHHCCCCHHHHHHHCC-HHHHHHHHH------HCCCCCEEEEEECCCHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             532100110000100000-001223454------4287202578721101043457-88886410012334311000138
Q gi|254780941|r  101 HADIVCLVVDSHRELKVN-IHDLLKEIA------KRSSRLILILNKIDCVKPERLL-EQAEIANKLVFIEKTFMVSATKG  172 (311)
Q Consensus       101 ~aDiil~VvDa~~~~~~~-~~~il~~l~------~~~~p~IiVlNKiDlv~~~~l~-~~~~~~~~~~~~~~i~~ISAk~g  172 (311)
T Consensus        80 ~a~~~ilVydvt~~~SF~~v~~~~~~i~~~~~~~~~~~piiLVGNK~DL~~~R~v~~~~~~~~a~~~~~~~f~EtSAK~~  159 (198)
T cd04142          80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN  159 (198)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             68889999988677888999999999999851479998289983454310035688999999998519976998878899


Q ss_pred             CCHHHHHHHHHHHCCCCC
Q ss_conf             742678999998366223
Q gi|254780941|r  173 HGCDDVLNYLCSTLPLAP  190 (311)
Q Consensus       173 ~Gid~L~~~L~~~lpe~~  190 (311)
T Consensus       160 ~nV~~~F~~lvr~i~~~~  177 (198)
T cd04142         160 WHILLLFKELLISATTRG  177 (198)
T ss_pred             CCHHHHHHHHHHHHHHHC
T ss_conf             698999999999998604