HHsearch alignment for GI: 254780941 and conserved domain: cd04148
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.55 E-value=1e-13 Score=108.65 Aligned_cols=151 Identities=18% Similarity=0.219 Sum_probs=95.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE--EEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 9983389986889999986892021058888602--1278999739--94899998798401012357532100234555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR--SIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr--~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
T Consensus 3 VvllGd~gVGKTSLi~rf~~~~f~-~~~y-~~t~~~d~~~k~v~vd~~~~~l~i~Dt~g~e~~~--------~-~~~~~~ 71 (221)
T cd04148 3 VVMLGSPGVGKSSLASQFTSGEYD-DHAY-DASGDDDTYERTVSVDGEESTLVVIDHWEQEMWT--------E-DSCMQY 71 (221)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCC-CCCC-CCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHH--------H-HHHHHH
T ss_conf 999998997099999999819869-8667-8744248899999999999899999898731266--------6-656530
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHHH----CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 53210011000010000-00012234544----28720257872110104345-78888641001233431100013874
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIAK----RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~~----~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
T Consensus 72 ~ada~ilVYdvtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL~~~R~Vs~eEg~~~A~~~~~-~F~EtSAk~~~N 150 (221)
T cd04148 72 QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDC-KFIETSAGLQHN 150 (221)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHCCC-EEEECCCCCCCC
T ss_conf 6868999996466778888999999999864899951999853566686389999999999998599-899945799949
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 2678999998366
Q gi|254780941|r 175 CDDVLNYLCSTLP 187 (311)
Q Consensus 175 id~L~~~L~~~lp 187 (311)
T Consensus 151 V~elF~~lvrqIr 163 (221)
T cd04148 151 VDELLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999998