HHsearch alignment for GI: 254780941 and conserved domain: cd04151
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.75 E-value=1.8e-17 Score=132.89 Aligned_cols=148 Identities=23% Similarity=0.278 Sum_probs=96.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99833899868899999868920210588886021278999739948999987984010123575321002345555321
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADI 104 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDi 104 (311)
T Consensus 2 il~lG~~~~GKTsll~~~~~~~~~~~--~p--Tig~~~~~i~~~~~~~~iwD~~G~--------e~~r~~~~~y~~~~~~ 69 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTT--IP--TIGFNVETVTYKNLKFQVWDLGGQ--------TSIRPYWRCYYSNTDA 69 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC--CC--CCCCCEEEEEECCEEEEEEECCCC--------CCCCHHHHHHCCCCCE
T ss_conf 99999999989999999970996775--78--488246999989889999967986--------2446278874667889
Q ss_pred HCCCCHHHHHHHC-----CHHHHHHHHHHCCCCCEEEEEECCCHH---HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 0011000010000-----000122345442872025787211010---43457888864100123343110001387426
Q gi|254780941|r 105 VCLVVDSHRELKV-----NIHDLLKEIAKRSSRLILILNKIDCVK---PERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 105 il~VvDa~~~~~~-----~~~~il~~l~~~~~p~IiVlNKiDlv~---~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
T Consensus 70 ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~tSA~tG~gV~ 149 (158)
T cd04151 70 IIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLD 149 (158)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
T ss_conf 99997457878999999999999834653698199999766776577999999998598741699689996787893999
Q ss_pred HHHHHHHH
Q ss_conf 78999998
Q gi|254780941|r 177 DVLNYLCS 184 (311)
Q Consensus 177 ~L~~~L~~ 184 (311)
T Consensus 150 e~f~wL~~ 157 (158)
T cd04151 150 EGMDWLVN 157 (158)
T ss_pred HHHHHHHC
T ss_conf 99999856