HHsearch alignment for GI: 254780941 and conserved domain: cd04161

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.66  E-value=7.4e-16  Score=122.48  Aligned_cols=148  Identities=23%  Similarity=0.238  Sum_probs=98.9

Q ss_pred             EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99833899868899999868920210588886021278999739948999987984010123575321002345555321
Q gi|254780941|r   25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADI  104 (311)
Q Consensus        25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDi  104 (311)
T Consensus         2 ililGLd~aGKTTil~~l~~~~~~~~~PT~G~~----~~~~~~~~~~l~~~DlgG~~~--------~R~lW~~Y~~~~~g   69 (167)
T cd04161           2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGGAN--------FRGIWVNYYAEAHG   69 (167)
T ss_pred             EEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCCHH--------HHHHHHHHCCCCCE
T ss_conf             899900899889999998289987650877731----799998999999998998778--------88999987347765


Q ss_pred             HCCCCHHHHHHHC-----CHHHHHHHHHHCCCCCEEEEEECCCHH---HHHHHHHHHHHH---HCCCCCCCCCCCCCCCC
Q ss_conf             0011000010000-----000122345442872025787211010---434578888641---00123343110001387
Q gi|254780941|r  105 VCLVVDSHRELKV-----NIHDLLKEIAKRSSRLILILNKIDCVK---PERLLEQAEIAN---KLVFIEKTFMVSATKGH  173 (311)
Q Consensus       105 il~VvDa~~~~~~-----~~~~il~~l~~~~~p~IiVlNKiDlv~---~~~l~~~~~~~~---~~~~~~~i~~ISAk~g~  173 (311)
T Consensus        70 IIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~L~~l~~~~~~~~~I~~csA~tG~  149 (167)
T cd04161          70 LVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGL  149 (167)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCEEEEEECEEECCC
T ss_conf             79998557588999999999999658877899599998865761589999999881974240899863799957644488


Q ss_pred             C------HHHHHHHHHH
Q ss_conf             4------2678999998
Q gi|254780941|r  174 G------CDDVLNYLCS  184 (311)
Q Consensus       174 G------id~L~~~L~~  184 (311)
T Consensus       150 G~~~~~~l~eGl~WL~~  166 (167)
T cd04161         150 GKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             CCCCCCCHHHHHHHHHC
T ss_conf             87876631549989864