HHsearch alignment for GI: 254780941 and conserved domain: cd04161
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.66 E-value=7.4e-16 Score=122.48 Aligned_cols=148 Identities=23% Similarity=0.238 Sum_probs=98.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99833899868899999868920210588886021278999739948999987984010123575321002345555321
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADI 104 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDi 104 (311)
T Consensus 2 ililGLd~aGKTTil~~l~~~~~~~~~PT~G~~----~~~~~~~~~~l~~~DlgG~~~--------~R~lW~~Y~~~~~g 69 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGGAN--------FRGIWVNYYAEAHG 69 (167)
T ss_pred EEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCCHH--------HHHHHHHHCCCCCE
T ss_conf 899900899889999998289987650877731----799998999999998998778--------88999987347765
Q ss_pred HCCCCHHHHHHHC-----CHHHHHHHHHHCCCCCEEEEEECCCHH---HHHHHHHHHHHH---HCCCCCCCCCCCCCCCC
Q ss_conf 0011000010000-----000122345442872025787211010---434578888641---00123343110001387
Q gi|254780941|r 105 VCLVVDSHRELKV-----NIHDLLKEIAKRSSRLILILNKIDCVK---PERLLEQAEIAN---KLVFIEKTFMVSATKGH 173 (311)
Q Consensus 105 il~VvDa~~~~~~-----~~~~il~~l~~~~~p~IiVlNKiDlv~---~~~l~~~~~~~~---~~~~~~~i~~ISAk~g~ 173 (311)
T Consensus 70 IIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~L~~l~~~~~~~~~I~~csA~tG~ 149 (167)
T cd04161 70 LVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGL 149 (167)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCEEEEEECEEECCC
T ss_conf 79998557588999999999999658877899599998865761589999999881974240899863799957644488
Q ss_pred C------HHHHHHHHHH
Q ss_conf 4------2678999998
Q gi|254780941|r 174 G------CDDVLNYLCS 184 (311)
Q Consensus 174 G------id~L~~~L~~ 184 (311)
T Consensus 150 G~~~~~~l~eGl~WL~~ 166 (167)
T cd04161 150 GKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCCCCHHHHHHHHHC
T ss_conf 87876631549989864