HHsearch alignment for GI: 254780941 and conserved domain: cd04162
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.53 E-value=6.3e-14 Score=109.95 Aligned_cols=152 Identities=13% Similarity=0.144 Sum_probs=95.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCE-EEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99833899868899999868920-21058888602127899973994899998798401012357532100234555532
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKV-SIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD 103 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~v-sivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aD 103 (311)
T Consensus 2 IlilGLd~aGKTTil~~l~~~~~~~~~~PT~Gf~----~~~i~~~~~~l~~wDlgGq~--------~~R~~W~~Y~~~~~ 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN----SVAIPTQDAIMELLEIGGSQ--------NLRKYWKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCHH--------HHHHHHHHHHHCCC
T ss_conf 9999679998999999981699876535632774----69999899999998537528--------88656998711775
Q ss_pred HHCCCCHHHHHHHC-CHHHHHHHHH--HCCCCCEEEEEECCCHHHHHHHHHHHHHH--HC-CCCCCCCCCCCCCCCCHHH
Q ss_conf 10011000010000-0001223454--42872025787211010434578888641--00-1233431100013874267
Q gi|254780941|r 104 IVCLVVDSHRELKV-NIHDLLKEIA--KRSSRLILILNKIDCVKPERLLEQAEIAN--KL-VFIEKTFMVSATKGHGCDD 177 (311)
Q Consensus 104 iil~VvDa~~~~~~-~~~~il~~l~--~~~~p~IiVlNKiDlv~~~~l~~~~~~~~--~~-~~~~~i~~ISAk~g~Gid~ 177 (311)
T Consensus 70 gIIfVVDssD~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~s~~ei~~~L~L~~i~~~r~w~iq~~s~~g~gl~~ 149 (164)
T cd04162 70 GLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPS 149 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHH
T ss_conf 89999956888899999999999970879986999986324336999999998669946379998899711047998589
Q ss_pred HHHHHHHHCCC
Q ss_conf 89999983662
Q gi|254780941|r 178 VLNYLCSTLPL 188 (311)
Q Consensus 178 L~~~L~~~lpe 188 (311)
T Consensus 150 ~~~~l~~~~~~ 160 (164)
T cd04162 150 RMEAVKDLLSQ 160 (164)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999