HHsearch alignment for GI: 254780941 and conserved domain: cd04167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.62 E-value=4.8e-15 Score=117.21 Aligned_cols=157 Identities=20% Similarity=0.291 Sum_probs=103.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--EEEEC-CCCCCEE---------------EE--EEEEEE---ECCEEEEEEECCCC
Q ss_conf 89983389986889999986892--02105-8888602---------------12--789997---39948999987984
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK--VSIVT-HKVQTTR---------------SI--VRGIVS---EKESQIVFLDTPGI 80 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~--vsivS-~k~~TTr---------------~~--i~gi~~---~~~~qiifvDTPG~ 80 (311)
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPGH 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 59998278989899999999973445554044421135751646654203558614599998256675057877889872
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH------HHHH----HHH
Q ss_conf 010123575321002345555321001100001000000012234544287202578721101------0434----578
Q gi|254780941|r 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV------KPER----LLE 150 (311)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv------~~~~----l~~ 150 (311)
T Consensus 82 ~--------dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~ilviNKiDRLi~el~l~p~day~~~~~ 153 (213)
T cd04167 82 V--------NFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRH 153 (213)
T ss_pred H--------HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHHHHHHHHH
T ss_conf 4--------17999998886377679999878887577999999999869998999988234314406998999998999
Q ss_pred HHHHHH----HCC---------CCCCCCCCCCCCCCC--------HHHHHHHHHHHCCC
Q ss_conf 888641----001---------233431100013874--------26789999983662
Q gi|254780941|r 151 QAEIAN----KLV---------FIEKTFMVSATKGHG--------CDDVLNYLCSTLPL 188 (311)
Q Consensus 151 ~~~~~~----~~~---------~~~~i~~ISAk~g~G--------id~L~~~L~~~lpe 188 (311)
T Consensus 154 ii~~vn~~i~~~~~~~~~~~~p~~~nV~f~Sa~~gw~ftl~~fa~~y~l~d~i~~~ip~ 212 (213)
T cd04167 154 IIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPS 212 (213)
T ss_pred HHHHHHHHHHHHCCCCCCEECCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999999997078735165688796999970005212362321168999999963889