HHsearch alignment for GI: 254780941 and conserved domain: cd04172

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.43  E-value=3e-12  Score=99.15  Aligned_cols=152  Identities=16%  Similarity=0.160  Sum_probs=93.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r   24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH  101 (311)
Q Consensus        24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~  101 (311)
T Consensus         7 KivlvGd~~VGKTsLi~r~~~~~F~--~~y~pTi~~~~~~~~~i~~~~v~l~iwDTaGqe--------~f~~l~~~~y~~   76 (182)
T cd04172           7 KIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSP--------YYDNVRPLSYPD   76 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCEEEEEEEEEEEECCEEEEEEEEECCCCH--------HCCCCCHHHHCC
T ss_conf             9999999998999999999839999--986873532268999999999999999689862--------012212555127


Q ss_pred             HHHHCCCCHHHHHHHCCH--HHHHHHHHH--CCCCCEEEEEECCCHHHHH-------------HHHHHHHHHHCCCCCCC
Q ss_conf             321001100001000000--012234544--2872025787211010434-------------57888864100123343
Q gi|254780941|r  102 ADIVCLVVDSHRELKVNI--HDLLKEIAK--RSSRLILILNKIDCVKPER-------------LLEQAEIANKLVFIEKT  164 (311)
Q Consensus       102 aDiil~VvDa~~~~~~~~--~~il~~l~~--~~~p~IiVlNKiDlv~~~~-------------l~~~~~~~~~~~~~~~i  164 (311)
T Consensus        77 ~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~~~A~~~g~~~y  156 (182)
T cd04172          77 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATY  156 (182)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf             87899996489778899999999999998687998899961710124414566776456778699999999997699799


Q ss_pred             CCCCCCCCC-CHHHHHHHHHHH
Q ss_conf             110001387-426789999983
Q gi|254780941|r  165 FMVSATKGH-GCDDVLNYLCST  185 (311)
Q Consensus       165 ~~ISAk~g~-Gid~L~~~L~~~  185 (311)
T Consensus       157 ~EtSAk~~~n~V~e~F~~a~~a  178 (182)
T cd04172         157 IECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             EECCCCCCCCCHHHHHHHHHHH
T ss_conf             9917078995989999999999