HHsearch alignment for GI: 254780941 and conserved domain: cd04172
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.43 E-value=3e-12 Score=99.15 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=93.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
T Consensus 7 KivlvGd~~VGKTsLi~r~~~~~F~--~~y~pTi~~~~~~~~~i~~~~v~l~iwDTaGqe--------~f~~l~~~~y~~ 76 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSP--------YYDNVRPLSYPD 76 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCEEEEEEEEEEEECCEEEEEEEEECCCCH--------HCCCCCHHHHCC
T ss_conf 9999999998999999999839999--986873532268999999999999999689862--------012212555127
Q ss_pred HHHHCCCCHHHHHHHCCH--HHHHHHHHH--CCCCCEEEEEECCCHHHHH-------------HHHHHHHHHHCCCCCCC
Q ss_conf 321001100001000000--012234544--2872025787211010434-------------57888864100123343
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNI--HDLLKEIAK--RSSRLILILNKIDCVKPER-------------LLEQAEIANKLVFIEKT 164 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~--~~il~~l~~--~~~p~IiVlNKiDlv~~~~-------------l~~~~~~~~~~~~~~~i 164 (311)
T Consensus 77 ~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~~~A~~~g~~~y 156 (182)
T cd04172 77 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATY 156 (182)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 87899996489778899999999999998687998899961710124414566776456778699999999997699799
Q ss_pred CCCCCCCCC-CHHHHHHHHHHH
Q ss_conf 110001387-426789999983
Q gi|254780941|r 165 FMVSATKGH-GCDDVLNYLCST 185 (311)
Q Consensus 165 ~~ISAk~g~-Gid~L~~~L~~~ 185 (311)
T Consensus 157 ~EtSAk~~~n~V~e~F~~a~~a 178 (182)
T cd04172 157 IECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred EECCCCCCCCCHHHHHHHHHHH
T ss_conf 9917078995989999999999