HHsearch alignment for GI: 254780941 and conserved domain: cd04173
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.43 E-value=4.5e-12 Score=97.96 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=94.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 9983389986889999986892021058888602127899973994--89999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES--QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~--qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
T Consensus 4 iVlvGD~~VGKTsLl~~f~~~~F~-~~y~p-Ti~~~~~~~~~vd~~~v~L~iWDTAGqE--------~y~~lr~~yyr~a 73 (222)
T cd04173 4 IVVVGDAECGKTALLQVFAKDAYP-GSYVP-TVFENYTASFEIDKRRIELNMWDTSGSS--------YYDNVRPLAYPDS 73 (222)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC-CCCCC-CEEEEEEEEEEECCEEEEEEEECCCCCC--------HHHHHHHHHCCCC
T ss_conf 999898998989999999639999-98478-4587789999999999999997688850--------3455678750369
Q ss_pred HHHCCCCHHHHHHHCCH--HHHHHHHHH--CCCCCEEEEEECCCHHHHHHH-------------HHHHHHHHCCCCCCCC
Q ss_conf 21001100001000000--012234544--287202578721101043457-------------8888641001233431
Q gi|254780941|r 103 DIVCLVVDSHRELKVNI--HDLLKEIAK--RSSRLILILNKIDCVKPERLL-------------EQAEIANKLVFIEKTF 165 (311)
Q Consensus 103 Diil~VvDa~~~~~~~~--~~il~~l~~--~~~p~IiVlNKiDlv~~~~l~-------------~~~~~~~~~~~~~~i~ 165 (311)
T Consensus 74 ~~~llvfdit~~~SF~~v~~~W~~ei~~~~p~~piiLVGnK~DLR~d~~~~~el~~~~~~pVt~eeg~~lA~~~ga~~y~ 153 (222)
T cd04173 74 DAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYV 153 (222)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 89999983897788999999999999985899978999587424568788999985578887899999999976998899
Q ss_pred CCCCCCCC-CHHHHHHHHHHH
Q ss_conf 10001387-426789999983
Q gi|254780941|r 166 MVSATKGH-GCDDVLNYLCST 185 (311)
Q Consensus 166 ~ISAk~g~-Gid~L~~~L~~~ 185 (311)
T Consensus 154 EcSAk~~~n~V~evF~~a~~~ 174 (222)
T cd04173 154 ECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred ECCCCCCCCCHHHHHHHHHHH
T ss_conf 888486874989999999999