HHsearch alignment for GI: 254780941 and conserved domain: cd04174
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.44 E-value=4.4e-12 Score=98.06 Aligned_cols=155 Identities=20% Similarity=0.146 Sum_probs=98.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 2189983389986889999986892021058888602127899973994--89999879840101235753210023455
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES--QIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~--qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
T Consensus 13 ~~KiVlVGD~~VGKTsLl~~~~~~~F~-~~y~p-Tv~~~~~~~i~v~~~~v~L~lWDTAGq--------E~y~~lr~~yY 82 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVP-TVFENYTAGLETEEQRVELSLWDTSGS--------PYYDNVRPLCY 82 (232)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCC-CCCCC-CEEEEEEEEEEECCEEEEEEEEECCCC--------CCCCHHHHHHH
T ss_conf 889999998998999999999739899-98588-368888999999999999999838997--------01003679974
Q ss_pred HHHHHHCCCCHHHHHHHCC--HHHHHHHHHH--CCCCCEEEEEECCCHHHHHH-------------HHHHHHHHHCCCCC
Q ss_conf 5532100110000100000--0012234544--28720257872110104345-------------78888641001233
Q gi|254780941|r 100 KHADIVCLVVDSHRELKVN--IHDLLKEIAK--RSSRLILILNKIDCVKPERL-------------LEQAEIANKLVFIE 162 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~~--~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l-------------~~~~~~~~~~~~~~ 162 (311)
T Consensus 83 ~~a~~~ll~Fdvt~~~Sfe~~~~~Wi~Ei~~~~p~~piiLVGnK~DLr~d~~~l~~L~~~~~~pVt~eeg~~~Ak~iga~ 162 (232)
T cd04174 83 SDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAE 162 (232)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
T ss_conf 06878999996898799998999999999986899978999876021547577889975688875799999999974997
Q ss_pred CCCCCCCCCCC-CHHHHHHHHHHHC
Q ss_conf 43110001387-4267899999836
Q gi|254780941|r 163 KTFMVSATKGH-GCDDVLNYLCSTL 186 (311)
Q Consensus 163 ~i~~ISAk~g~-Gid~L~~~L~~~l 186 (311)
T Consensus 163 ~Y~E~SA~tge~~v~~vF~~a~~~~ 187 (232)
T cd04174 163 VYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 8998756866625999999999999