HHsearch alignment for GI: 254780941 and conserved domain: pfam00448

>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=98.07  E-value=2.2e-05  Score=54.68  Aligned_cols=143  Identities=22%  Similarity=0.269  Sum_probs=73.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHH------CCCEEEECC---CCCC-----EEEEEEEE-----EE----------------E
Q ss_conf             189983389986889999986------892021058---8886-----02127899-----97----------------3
Q gi|254780941|r   23 GCVALVGATNAGKSTLVNRFV------GAKVSIVTH---KVQT-----TRSIVRGI-----VS----------------E   67 (311)
Q Consensus        23 g~VaivG~pN~GKSTL~N~l~------g~~vsivS~---k~~T-----Tr~~i~gi-----~~----------------~   67 (311)
T Consensus         2 ~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~   81 (196)
T pfam00448         2 NVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKA   81 (196)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             69999899999889999999999997799289997587768899999999986398178148777878999999999884


Q ss_pred             CCEEEEEEECCCCHHHCCCCCCCCCCHH---HHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf             9948999987984010123575321002---3455553210011000010000000122345442872025787211010
Q gi|254780941|r   68 KESQIVFLDTPGIFNAKDSYHKLMIRLS---WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK  144 (311)
Q Consensus        68 ~~~qiifvDTPG~~~~~~~l~~~~~~~~---~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~  144 (311)
T Consensus        82 ~~~D~IlIDTaGr~~~----d~~~~~el~~~~~~~-~~~~~~LVl~a~~~~~--~~~~~~~f~~~~~~~~~I~TKlDet~  154 (196)
T pfam00448        82 ENYDVVLVDTAGRLQN----DKNLMDELKKIKRVI-APDEVLLVLDATTGQN--ALNQAKAFNEAVGITGVILTKLDGDA  154 (196)
T ss_pred             CCCCEEEEECCCCCCC----CHHHHHHHHHHHHHC-CCCCEEEEEECCCCCC--HHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             6899999989998747----677899999998522-8730289985677821--37899987600477626888405788


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCHHHHH
Q ss_conf             43457888864100123343110001-387426789
Q gi|254780941|r  145 PERLLEQAEIANKLVFIEKTFMVSAT-KGHGCDDVL  179 (311)
Q Consensus       145 ~~~l~~~~~~~~~~~~~~~i~~ISAk-~g~Gid~L~  179 (311)
T Consensus       155 ~~G--~~l~~~~~~-----~~Pi~~~t~Gq~v~Dl~  183 (196)
T pfam00448       155 KGG--AALSIAAET-----GKPIKFIGVGEKIDDLE  183 (196)
T ss_pred             CCC--HHHHHHHHH-----CCCEEEEECCCCHHHCC
T ss_conf             752--999899998-----96979996799812063