HHsearch alignment for GI: 254780941 and conserved domain: pfam00448
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=98.07 E-value=2.2e-05 Score=54.68 Aligned_cols=143 Identities=22% Similarity=0.269 Sum_probs=73.5
Q ss_pred EEEEEECCCCCCHHHHHHHHH------CCCEEEECC---CCCC-----EEEEEEEE-----EE----------------E
Q ss_conf 189983389986889999986------892021058---8886-----02127899-----97----------------3
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFV------GAKVSIVTH---KVQT-----TRSIVRGI-----VS----------------E 67 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~------g~~vsivS~---k~~T-----Tr~~i~gi-----~~----------------~ 67 (311)
T Consensus 2 ~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~ 81 (196)
T pfam00448 2 NVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKA 81 (196)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 69999899999889999999999997799289997587768899999999986398178148777878999999999884
Q ss_pred CCEEEEEEECCCCHHHCCCCCCCCCCHH---HHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 9948999987984010123575321002---3455553210011000010000000122345442872025787211010
Q gi|254780941|r 68 KESQIVFLDTPGIFNAKDSYHKLMIRLS---WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 (311)
Q Consensus 68 ~~~qiifvDTPG~~~~~~~l~~~~~~~~---~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~ 144 (311)
T Consensus 82 ~~~D~IlIDTaGr~~~----d~~~~~el~~~~~~~-~~~~~~LVl~a~~~~~--~~~~~~~f~~~~~~~~~I~TKlDet~ 154 (196)
T pfam00448 82 ENYDVVLVDTAGRLQN----DKNLMDELKKIKRVI-APDEVLLVLDATTGQN--ALNQAKAFNEAVGITGVILTKLDGDA 154 (196)
T ss_pred CCCCEEEEECCCCCCC----CHHHHHHHHHHHHHC-CCCCEEEEEECCCCCC--HHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 6899999989998747----677899999998522-8730289985677821--37899987600477626888405788
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCHHHHH
Q ss_conf 43457888864100123343110001-387426789
Q gi|254780941|r 145 PERLLEQAEIANKLVFIEKTFMVSAT-KGHGCDDVL 179 (311)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~~i~~ISAk-~g~Gid~L~ 179 (311)
T Consensus 155 ~~G--~~l~~~~~~-----~~Pi~~~t~Gq~v~Dl~ 183 (196)
T pfam00448 155 KGG--AALSIAAET-----GKPIKFIGVGEKIDDLE 183 (196)
T ss_pred CCC--HHHHHHHHH-----CCCEEEEECCCCHHHCC
T ss_conf 752--999899998-----96979996799812063