HHsearch alignment for GI: 254780941 and conserved domain: pfam02492
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=98.14 E-value=1.5e-05 Score=55.78 Aligned_cols=132 Identities=18% Similarity=0.207 Sum_probs=71.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC-----CEEEECCCCC-------------CEEEEEE-E-E---------------E--EE
Q ss_conf 998338998688999998689-----2021058888-------------6021278-9-9---------------9--73
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGA-----KVSIVTHKVQ-------------TTRSIVR-G-I---------------V--SE 67 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~-----~vsivS~k~~-------------TTr~~i~-g-i---------------~--~~ 67 (311)
T Consensus 3 ~iitGFLGsGKTTll~~ll~~~~~~~~~avI~Ne~g~~~iD~~ll~~~~~~v~el~~GciCc~~~~d~~~~l~~l~~~~~ 82 (174)
T pfam02492 3 TVLTGFLGSGKTTLLEHLLRDNREGLKIAVIVNDFGETGIDAELLRETGAEIVELNNGCICCTIREDLSMVLEALLELKL 82 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99934887889999999998444898479999336530207999870696189974886645433369999999985578
Q ss_pred CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCH--HHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf 9948999987984010123575321002345555321001100001000000--01223454428720257872110104
Q gi|254780941|r 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI--HDLLKEIAKRSSRLILILNKIDCVKP 145 (311)
Q Consensus 68 ~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~--~~il~~l~~~~~p~IiVlNKiDlv~~ 145 (311)
T Consensus 83 ~~~d~iiIE~sGla~p~~i~~------~-~~~~~~~~~i~vvDa~~~~~~~~~~~~~~~Qi~~AD---~vvlNK~Dl~~~ 152 (174)
T pfam02492 83 PRLDLLFIETTGLACPAPVLD------L-RSDLGLDGVVTVVDVKNFTEGEDIPEKAPDQIAFAD---LIVINKTDLAPA 152 (174)
T ss_pred CCCCEEEEECCCCCCHHHHHH------H-HHCCCCCEEEEEEECHHHHHCCCCHHHHHHHHHHCC---EEEEEHHHCCCC
T ss_conf 999999995876677077776------5-320265459999972343300200789999998769---999846653782
Q ss_pred HH-HHHHHHHHHHCCCCCCCCC
Q ss_conf 34-5788886410012334311
Q gi|254780941|r 146 ER-LLEQAEIANKLVFIEKTFM 166 (311)
Q Consensus 146 ~~-l~~~~~~~~~~~~~~~i~~ 166 (311)
T Consensus 153 ~~~l~~~~~~i~~lNP~A~Iip 174 (174)
T pfam02492 153 VGALEKLEADLRRLNPEAPIIP 174 (174)
T ss_pred HHHHHHHHHHHHHHCCCCEECC
T ss_conf 7699999999999789993669