HHsearch alignment for GI: 254780941 and conserved domain: pfam04670
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=98.69 E-value=1.6e-07 Score=68.61 Aligned_cols=120 Identities=15% Similarity=0.273 Sum_probs=73.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEE-EEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99833899868899999868920210588886021278-99973994899998798401012357532100234555532
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-GIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD 103 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~-gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aD 103 (311)
T Consensus 2 iLLMG~~~sGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~l~l~iwD~pGq~~---f~e~~~~~~~e~if~~v~ 78 (230)
T pfam04670 2 VLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDD---FMENYLTRQKEHIFSNVG 78 (230)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEECCCCCEEEEEECCCCHH---HHHHHCCCCHHHHHHCCC
T ss_conf 78756899987776999867998214120257777677877416873689997698353---544120022354764478
Q ss_pred HHCCCCHHH-HHHHCCHH---HHHHHHHHC--CCCCEEEEEECCCHHHHH
Q ss_conf 100110000-10000000---122345442--872025787211010434
Q gi|254780941|r 104 IVCLVVDSH-RELKVNIH---DLLKEIAKR--SSRLILILNKIDCVKPER 147 (311)
Q Consensus 104 iil~VvDa~-~~~~~~~~---~il~~l~~~--~~p~IiVlNKiDlv~~~~ 147 (311)
T Consensus 79 ~lIyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~~v~vfiHK~D~l~~d~ 128 (230)
T pfam04670 79 VLIYVFDVESREYEEDLATLVKIIEALYQYSPNAKVFVLIHKMDLLSEDE 128 (230)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHH
T ss_conf 89999968886099999999999999998399988999996035888667