HHsearch alignment for GI: 254780941 and conserved domain: pfam05049
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=99.36 E-value=2.4e-12 Score=99.71 Aligned_cols=161 Identities=22% Similarity=0.277 Sum_probs=110.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC----CEEEECCCCCCEEEEEEEEEEECCEE-EEEEECCCCHHHCCCCCCCCCCHHHH
Q ss_conf 18998338998688999998689----20210588886021278999739948-99998798401012357532100234
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGA----KVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAKDSYHKLMIRLSWS 97 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~----~vsivS~k~~TTr~~i~gi~~~~~~q-iifvDTPG~~~~~~~l~~~~~~~~~~ 97 (311)
T Consensus 36 lnIavtGesG~GkSsfINalRg~g~e~~~aA~tGvvetT~~~~--~Y~hp~~pnV~lwDLPG~gt~~f~~~~Yl~~~--- 110 (375)
T pfam05049 36 LKIAVTGDSGNGKSSFINALRGIGHEEDGSAPTGVVETTMKRT--PYSHPHFPNVVLWDLPGLGATNFTVETYLEEM--- 110 (375)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCC--CCCCCCCCCEEEECCCCCCCCCCCHHHHHHHC---
T ss_conf 4799854899867899998747898777768768766326755--67899999807962899998998989999874---
Q ss_pred HHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCC------------HHHHHHHHHHHHH-----HHC-C
Q ss_conf 555532100110000100000001223454428720257872110------------1043457888864-----100-1
Q gi|254780941|r 98 TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC------------VKPERLLEQAEIA-----NKL-V 159 (311)
Q Consensus 98 ~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDl------------v~~~~l~~~~~~~-----~~~-~ 159 (311)
T Consensus 111 ~f~~yDfFiiis--s~rf~~n~v~LAk~i~~mgK~fyfVrtKvD~Dl~~e~~~kp~~F~~e~~Lq~IR~~c~~~L~k~gv 188 (375)
T pfam05049 111 KFSEYDFFIIIS--SERFSLNDVKLAKAIQRMGKRFYFVRTKLDSDLSNEQKGKPQTFPKEKVLQNIQDNCRNNLQKEGV 188 (375)
T ss_pred CCCCCCEEEEEE--CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 856477899996--775432018999999983894799986236760657625899999899999999999999987588
Q ss_pred CCCCCCCCCCC--CCCCHHHHHHHHHHHCCCCC
Q ss_conf 23343110001--38742678999998366223
Q gi|254780941|r 160 FIEKTFMVSAT--KGHGCDDVLNYLCSTLPLAP 190 (311)
Q Consensus 160 ~~~~i~~ISAk--~g~Gid~L~~~L~~~lpe~~ 190 (311)
T Consensus 189 ~eP~VFLvSnfdl~~yDFp~L~~TL~~eLP~hK 221 (375)
T pfam05049 189 KEPPIFLVSNLDPSHYDFPKLRDTLLKDLPIIK 221 (375)
T ss_pred CCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 899789981788132681899999998736867