HHsearch alignment for GI: 254780941 and conserved domain: pfam08477

>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=99.17  E-value=1.4e-10  Score=88.40  Aligned_cols=109  Identities=24%  Similarity=0.271  Sum_probs=67.4

Q ss_pred             EEEECCCCCCHHHHHHHHHCCCEEEE--CCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             99833899868899999868920210--5888860212789997399489999879840101235753210023455553
Q gi|254780941|r   25 VALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA  102 (311)
Q Consensus        25 VaivG~pN~GKSTL~N~l~g~~vsiv--S~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a  102 (311)
T Consensus         2 ivvvG~~~vGKTSLi~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------~~~~~~~~~~~~   73 (118)
T pfam08477         2 VVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDTLEVDGDTELLHIWDFGGREE--------LKFEHIIFMKTA   73 (118)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCHH--------HHHHHHHHCCCC
T ss_conf             999998997899999999839888766678777768889999999289999998999677--------766665422587


Q ss_pred             HHHCCCCHHHHHHHCC-HHHHHHHH---HH--CCCCCEEEEEECC
Q ss_conf             2100110000100000-00122345---44--2872025787211
Q gi|254780941|r  103 DIVCLVVDSHRELKVN-IHDLLKEI---AK--RSSRLILILNKID  141 (311)
Q Consensus       103 Diil~VvDa~~~~~~~-~~~il~~l---~~--~~~p~IiVlNKiD  141 (311)
T Consensus        74 d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D  118 (118)
T pfam08477        74 DAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD  118 (118)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf             467899979987899999999999999982099998899996859