HHsearch alignment for GI: 254780941 and conserved domain: pfam08477
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=99.17 E-value=1.4e-10 Score=88.40 Aligned_cols=109 Identities=24% Similarity=0.271 Sum_probs=67.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEE--CCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 99833899868899999868920210--5888860212789997399489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsiv--S~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
T Consensus 2 ivvvG~~~vGKTSLi~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------~~~~~~~~~~~~ 73 (118)
T pfam08477 2 VVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDTLEVDGDTELLHIWDFGGREE--------LKFEHIIFMKTA 73 (118)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCHH--------HHHHHHHHCCCC
T ss_conf 999998997899999999839888766678777768889999999289999998999677--------766665422587
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHH---HH--CCCCCEEEEEECC
Q ss_conf 2100110000100000-00122345---44--2872025787211
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEI---AK--RSSRLILILNKID 141 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l---~~--~~~p~IiVlNKiD 141 (311)
T Consensus 74 d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D 118 (118)
T pfam08477 74 DAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD 118 (118)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 467899979987899999999999999982099998899996859