HHsearch alignment for GI: 254780941 and conserved domain: pfam09547
>pfam09547 Spore_IV_A Stage IV sporulation protein A (spore_IV_A). SpoIVA is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.92 E-value=0.00054 Score=45.70 Aligned_cols=220 Identities=18% Similarity=0.193 Sum_probs=117.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCE-------------------EEECCCCCCEEE---EEEE--EEEECC--EEEEEEEC
Q ss_conf 899833899868899999868920-------------------210588886021---2789--997399--48999987
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKV-------------------SIVTHKVQTTRS---IVRG--IVSEKE--SQIVFLDT 77 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~v-------------------sivS~k~~TTr~---~i~g--i~~~~~--~qiifvDT 77 (311)
T Consensus 19 YiGVVGPVRTGKSTFIKrFMe~~VlPnI~~~~~keRa~DELPQS~aGktIMTTEPKFVP~eAv~I~l~~~~~~kVRLiDC 98 (492)
T pfam09547 19 YIGVVGPVRTGKSTFIKRFMELLVLPNIENEYKKERAKDELPQSGSGKTIMTTEPKFVPNEAVEIKLDDGLKFKVRLVDC 98 (492)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCEEEEEEEEE
T ss_conf 99962672067366999999985468889877877643037767899813336887665310488836984489999965
Q ss_pred CCCHH-H----CCCCCCCCCCHHHHH----------------HHHHHHHCCCC--HHHH------HHHCCHHHHHHHHHH
Q ss_conf 98401-0----123575321002345----------------55532100110--0001------000000012234544
Q gi|254780941|r 78 PGIFN-A----KDSYHKLMIRLSWST----------------IKHADIVCLVV--DSHR------ELKVNIHDLLKEIAK 128 (311)
Q Consensus 78 PG~~~-~----~~~l~~~~~~~~~~~----------------l~~aDiil~Vv--Da~~------~~~~~~~~il~~l~~ 128 (311)
T Consensus 99 VGY~V~gA~Gy~e~~~~RmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dIpRe~Y~eAEervI~ELk~ 178 (492)
T pfam09547 99 VGYIVEGALGYEEEDGPRMVKTPWFDEEIPFEEAAEIGTRKVITEHSTIGLVVTTDGSITDIPRENYVEAEERVIEELKE 178 (492)
T ss_pred CCEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 25675575555468975130489878887868887646541331577144999568875676644423579999999997
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---CCC-CCCCCCCC----C
Q ss_conf 287202578721101043457888864100123343110001387426789999983662---235-68964334----3
Q gi|254780941|r 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL---APW-VYSADQIS----D 200 (311)
Q Consensus 129 ~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe---~~~-~y~~~~~T----d 200 (311)
T Consensus 179 i~KPFiillNs~~P~s~e-t~~L~~eL~ekY~v-~Vl~vnc~~-m~~~DI~~Il~~vLyEFPV~Ei~~~lP~Wve~L~~~ 255 (492)
T pfam09547 179 IGKPFIILLNSQRPYSEE-TKELRDELEEKYDV-PVLPVNCAQ-MTEEDITEILEEVLYEFPVKEININLPKWVEELETE 255 (492)
T ss_pred HCCCEEEEEECCCCCCHH-HHHHHHHHHHHHCC-CEEEEEHHH-CCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCC
T ss_conf 099889998389989989-99999999998599-579967797-599999999999863388249986273688633887
Q ss_pred CHHHHHHHHHHHHHHH--------H---HHHCCCCCCEEEEEEEEECCCCCCEEEEEE
Q ss_conf 0256789987599999--------9---730045642047885331066772358999
Q gi|254780941|r 201 LPMFHFTAEITREKLF--------L---HLHKEIPYSSCVVTEKWEEKKDGSILIRQV 247 (311)
Q Consensus 201 ~~~~~~i~EiIREki~--------~---~l~~EiPY~~~v~v~~~~~~~~~~~~I~~~ 247 (311)
T Consensus 256 Hwlk~~~~~~i~~~~~~i~~irDv~~~~~~~~~~e~i~~~~l~~i~l-g~G~a~i~~~ 312 (492)
T pfam09547 256 HWLKQSFIEAIKEALKGVRKIRDIDRAVEALSEYEFVEKVELEEINL-GTGTARIDVT 312 (492)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCEEEEEEC-CCCEEEEEEE
T ss_conf 64779999999999986558873998860456454165512213776-8847999997