HHsearch alignment for GI: 254780941 and conserved domain: smart00174
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.64 E-value=5.2e-15 Score=116.96 Aligned_cols=152 Identities=17% Similarity=0.166 Sum_probs=95.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
T Consensus 1 ivllGd~~VGKTsli~r~~~~~f~--~~y~~Ti~~~~~~~~~~~~~~~~l~i~DtaG~e~-----~~~l~---~~~~~~a 70 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP--EDYVPTVFENYSADVEVDGKPVELGLWDTAGQED-----YDRLR---PLSYPDT 70 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC-----CCCCC---HHHCCCC
T ss_conf 599897897599999999539899--9857850578999999999999999994898703-----45450---0110488
Q ss_pred HHHCCCCHHHHHHHCCHH-H-HHHHHHH--CCCCCEEEEEECCCHHHHHH-------------HHHHHHHHHCCCCCCCC
Q ss_conf 210011000010000000-1-2234544--28720257872110104345-------------78888641001233431
Q gi|254780941|r 103 DIVCLVVDSHRELKVNIH-D-LLKEIAK--RSSRLILILNKIDCVKPERL-------------LEQAEIANKLVFIEKTF 165 (311)
Q Consensus 103 Diil~VvDa~~~~~~~~~-~-il~~l~~--~~~p~IiVlNKiDlv~~~~l-------------~~~~~~~~~~~~~~~i~ 165 (311)
T Consensus 71 ~~~ilvydvt~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~Vs~~~~~~~a~~~~~~~y~ 150 (174)
T smart00174 71 DVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYL 150 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 68999975898789999999899999986889869999875425012333545533146500299999999983997899
Q ss_pred CCCCCCCCCHHHHHHHHHHHC
Q ss_conf 100013874267899999836
Q gi|254780941|r 166 MVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 166 ~ISAk~g~Gid~L~~~L~~~l 186 (311)
T Consensus 151 EtSAk~g~nV~e~F~~l~r~~ 171 (174)
T smart00174 151 ECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EECCCCCCCHHHHHHHHHHHH
T ss_conf 964588949899999999997